nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation. - Fabian Isensee; Jens Petersen; André Klein; David Zimmerer; Paul F. Jaeger; Simon Kohl; Jakob Wasserthal; Gregor Köhler; Tobias Norajitra; Sebastian J. Wirkert; Klaus H. Maier-Hein (CoRR, 2018)

Abstract: nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation. - Fabian Isensee; Jens Petersen; André Klein; David Zimmerer; Paul F. Jaeger; Simon Kohl; Jakob Wasserthal; Gregor Köhler; Tobias Norajitra; Sebastian J. Wirkert; Klaus H. Maier-Hein (Bildverarbeitung für die Medizin, 2019)

Neural Architecture Evolution in Deep Reinforcement Learning for Continuous Control. - Jörg K. H. Franke; Gregor Köhler; Noor H. Awad; Frank Hutter (CoRR, 2019)

Sample-Efficient Automated Deep Reinforcement Learning. - Jörg K. H. Franke; Gregor Köhler; André Biedenkapp; Frank Hutter (ICLR, 2021)

Continuous-Time Deep Glioma Growth Models. - Jens Petersen; Fabian Isensee; Gregor Köhler; Paul F. Jäger; David Zimmerer; Ulf Neuberger; Wolfgang Wick; Jürgen Debus; Sabine Heiland; Martin Bendszus; Philipp Vollmuth; Klaus H. Maier-Hein (MICCAI (3), 2021)

GP-ConvCNP: Better generalization for conditional convolutional Neural Processes on time series data. - Jens Petersen; Gregor Köhler; David Zimmerer; Fabian Isensee; Paul F. Jäger; Klaus H. Maier-Hein (UAI, 2021)

GP-ConvCNP: Better Generalization for Convolutional Conditional Neural Processes on Time Series Data. - Jens Petersen; Gregor Köhler; David Zimmerer; Fabian Isensee; Paul F. Jäger; Klaus H. Maier-Hein (CoRR, 2021)

Unsupervised Anomaly Detection in the Wild. - David Zimmerer; Daniel Paech; Carsten T. Lüth; Jens Petersen; Gregor Köhler; Klaus H. Maier-Hein (Bildverarbeitung für die Medizin, 2022)

A Noisy nnU-Net Student for Semi-supervised Abdominal Organ Segmentation. - Gregor Köhler; Fabian Isensee; Klaus H. Maier-Hein (FLARE@MICCAI, 2022)

MOOD 2020: A Public Benchmark for Out-of-Distribution Detection and Localization on Medical Images. - David Zimmerer; Peter M. Full; Fabian Isensee; Paul Jäger 002; Tim Adler; Jens Petersen; Gregor Köhler; Tobias Roß; Annika Reinke; Antanas Kascenas; Bjørn Sand Jensen; Alison Q. O'Neil; et al. (IEEE Trans. Medical Imaging, 2022)

Contrastive Representations for Unsupervised Anomaly Detection and Localization. - Carsten T. Lüth; David Zimmerer; Gregor Köhler; Paul F. Jaeger; Fabian Isensee; Klaus H. Maier-Hein (Bildverarbeitung für die Medizin, 2023)

Abstract: MOOD 2020 - A Public Benchmark for Out-of-distribution Detection and Localization on Medical Images. - David Zimmerer; Peter M. Full; Fabian Isensee; Paul Jäger 002; Tim Adler; Jens Petersen; Gregor Köhler; Tobias Roß; Annika Reinke; Antanas Kascenas; Bjørn Sand Jensen; Alison Q. O'Neil; et al. (Bildverarbeitung für die Medizin, 2023)

MedNeXt: Transformer-Driven Scaling of ConvNets for Medical Image Segmentation. - Saikat Roy; Gregor Köhler; Constantin Ulrich; Michael Baumgartner 001; Jens Petersen; Fabian Isensee; Paul F. Jäger; Klaus H. Maier-Hein (MICCAI (4), 2023)

CRADL: Contrastive Representations for Unsupervised Anomaly Detection and Localization. - Carsten T. Lüth; David Zimmerer; Gregor Köhler; Paul F. Jaeger; Fabian Isensee; Jens Petersen; Klaus H. Maier-Hein (CoRR, 2023)

Transformer Utilization in Medical Image Segmentation Networks. - Saikat Roy; Gregor Köhler; Michael Baumgartner 001; Constantin Ulrich; Jens Petersen; Fabian Isensee; Klaus H. Maier-Hein (CoRR, 2023)

SAM.MD: Zero-shot medical image segmentation capabilities of the Segment Anything Model. - Saikat Roy; Tassilo Wald; Gregor Köhler; Maximilian Rokuss; Nico Disch; Julius Holzschuh; David Zimmerer; Klaus H. Maier-Hein (CoRR, 2023)

Exploring new ways: Enforcing representational dissimilarity to learn new features and reduce error consistency. - Tassilo Wald; Constantin Ulrich; Fabian Isensee; David Zimmerer; Gregor Köhler; Michael Baumgartner 001; Klaus H. Maier-Hein (CoRR, 2023)

Unleashing the Strengths of Unlabeled Data in Pan-cancer Abdominal Organ Quantification: the FLARE22 Challenge. - Jun Ma 016; Yao Zhang 010; Song Gu; Cheng Ge; Shihao Ma; Adamo Young; Cheng Zhu; Kangkang Meng; Xin Yang 009; Ziyan Huang; Fan Zhang; Wentao Liu; et al. (CoRR, 2023)

New Horizons in Parameter Regularization: A Constraint Approach. - Jörg K. H. Franke; Michael Hefenbrock; Gregor Köhler; Frank Hutter (CoRR, 2023)

Abstract: RecycleNet - Latent Feature Recycling Leads to Iterative Decision Refinement. - Gregor Köhler; Tassilo Wald; Constantin Ulrich; David Zimmerer; Paul F. Jaeger; Jörg K. H. Franke; Simon Kohl; Fabian Isensee; Klaus H. Maier-Hein (Bildverarbeitung für die Medizin, 2024)

Abstract: 3D Medical Image Segmentation with Transformer-based Scaling of ConvNets - MedNeXt. - Saikat Roy; Gregor Köhler; Michael Baumgartner 001; Constantin Ulrich; Fabian Isensee; Paul F. Jaeger; Klaus H. Maier-Hein (Bildverarbeitung für die Medizin, 2024)

Improving Deep Learning Optimization through Constrained Parameter Regularization. - Jörg K. H. Franke; Michael Hefenbrock; Gregor Köhler; Frank Hutter (NeurIPS, 2024)

Decoupling Semantic Similarity from Spatial Alignment for Neural Networks. - Tassilo Wald; Constantin Ulrich; Priyank Jaini; Gregor Köhler; David Zimmerer; Stefan Denner; Fabian Isensee; Michael Baumgartner 001; Klaus H. Maier-Hein (NeurIPS, 2024)

RecycleNet: Latent Feature Recycling Leads to Iterative Decision Refinement. - Gregor Köhler; Tassilo Wald; Constantin Ulrich; David Zimmerer; Paul F. Jaeger; Jörg K. H. Franke; Simon Kohl; Fabian Isensee; Klaus H. Maier-Hein (WACV, 2024)

PSFHS challenge report: Pubic symphysis and fetal head segmentation from intrapartum ultrasound images. - Jieyun Bai; Zihao Zhou; Zhanhong Ou; Gregor Köhler; Raphael Stock; Klaus H. Maier-Hein; Marawan Elbatel; Robert Martí; Xiaomeng Li 001; Yaoyang Qiu; Panjie Gou; Gongping Chen; et al. (Medical Image Anal., 2025)

Corrigendum to "PSFHS challenge report: pubic symphysis and fetal head segmentation from intrapartum ultrasound images" [Medical Image Analysis 99 (2025),103353]. - Jieyun Bai; Zihao Zhou; Zhanhong Ou; Gregor Köhler; Raphael Stock; Klaus H. Maier-Hein; Marawan Elbatel; Robert Martí; Xiaomeng Li 001; Yaoyang Qiu; Panjie Gou; Gongping Chen; et al. (Medical Image Anal., 2025)

Primus: Enforcing Attention Usage for 3D Medical Image Segmentation. - Tassilo Wald; Saikat Roy; Fabian Isensee; Constantin Ulrich; Sebastian Ziegler; Dasha Trofimova; Raphael Stock; Michael Baumgartner 001; Gregor Köhler; Klaus H. Maier-Hein (CoRR, 2025)