Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology. - Gregor Sturm; Francesca Finotello; Florent Petitprez; Jitao David Zhang; Jan Baumbach; Wolf-Herman Fridman; Markus List; Tatsiana Aneichyk (Bioinform., 2019)

Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data. - Gregor Sturm; Tamás Szabó; Georgios Fotakis; Marlene Haider; Dietmar Rieder; Zlatko Trajanoski; Francesca Finotello (Bioinform., 2020)

SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type composition. - Alexander Dietrich; Gregor Sturm; Lorenzo Merotto; Federico Marini 002; Francesca Finotello; Markus List (Bioinform., 2022)