General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept. - Dinler A. Antunes; Didier Devaurs; Mark Moll; Gregory Lizée; Lydia E. Kavraki (BCB, 2018)

APE-Gen2.0: Expanding Rapid Class I Peptide-Major Histocompatibility Complex Modeling to Post-Translational Modifications and Noncanonical Peptide Geometries. - Romanos Fasoulis; Maurício Menegatti Rigo; Gregory Lizée; Dinler A. Antunes; Lydia E. Kavraki (J. Chem. Inf. Model., 2024)