Significance testing for genomic mismatch scanning. - Gregory R. Grant; R. S. Spielman; Elisabetta Manduchi; Vivian G. Cheung; Warren J. Ewens (RECOMB, 1999)

Generation of patterns from gene expression data by assigning confidence to differentially expressed genes. - Elisabetta Manduchi; Gregory R. Grant; Steven E. McKenzie; G. Christian Overton; Saul Surrey; Christian J. Stoeckert Jr. (Bioinform., 2000)

Bioinformatics - The Machine Learning Approach. - Gregory R. Grant (Comput. Chem., 2000)

PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). - Amit Bahl; Brian P. Brunk; Ross L. Coppel; Jonathan Crabtree; Sharon J. Diskin; Martin J. Fraunholz; Gregory R. Grant; Dinesh Gupta; Robert L. Huestis; Jessica C. Kissinger; Philip Labo; Li Li; et al. (Nucleic Acids Res., 2002)

PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. - Amit Bahl; Brian P. Brunk; Jonathan Crabtree; Martin J. Fraunholz; Bindu Gajria; Gregory R. Grant; Hagai Ginsburg; Dinesh Gupta; Jessica C. Kissinger; Philip Labo; Li Li; Matthew D. Mailman; et al. (Nucleic Acids Res., 2003)

RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies. - Elisabetta Manduchi; Gregory R. Grant; H. He; Junmin Liu; Matthew D. Mailman; Angel D. Pizarro; Patricia L. Whetzel; Christian J. Stoeckert Jr. (Bioinform., 2004)

A practical false discovery rate approach to identifying patterns of differential expression in microarray data. - Gregory R. Grant; Junmin Liu; Christian J. Stoeckert Jr. (Bioinform., 2005)

A flexible two-stage procedure for identifying gene sets that are differentially expressed. - Ruth Heller; Elisabetta Manduchi; Gregory R. Grant; Warren J. Ewens (Bioinform., 2009)

GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. - Cristina Aurrecoechea; John Brestelli; Brian P. Brunk; Jane M. Carlton; Jennifer Dommer; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; Mark Heiges; et al. (Nucleic Acids Res., 2009)

PlasmoDB: a functional genomic database for malaria parasites. - Cristina Aurrecoechea; John Brestelli; Brian P. Brunk; Jennifer Dommer; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; Mark Heiges; Frank Innamorato; et al. (Nucleic Acids Res., 2009)

TriTrypDB: a functional genomic resource for the Trypanosomatidae. - Martin Aslett; Cristina Aurrecoechea; Matthew Berriman; John Brestelli; Brian P. Brunk; Mark Carrington; Daniel P. Depledge; Steve Fischer; Bindu Gajria; Xin Gao 002; Malcolm J. Gardner; Alan R. Gingle; et al. (Nucleic Acids Res., 2010)

EuPathDB: a portal to eukaryotic pathogen databases. - Cristina Aurrecoechea; John Brestelli; Brian P. Brunk; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; Mark Heiges; Frank Innamorato; John Iodice; et al. (Nucleic Acids Res., 2010)

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM). - Gregory R. Grant; Michael H. Farkas; Angel D. Pizarro; Nicholas F. Lahens; Jonathan Schug; Brian P. Brunk; Christian J. Stoeckert Jr.; John B. Hogenesch; Eric A. Pierce (Bioinform., 2011)

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species. - Cristina Aurrecoechea; Ana Barreto; John Brestelli; Brian P. Brunk; Elisabet V. Caler; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; Mark Heiges; et al. (Nucleic Acids Res., 2011)

EuPathDB: The Eukaryotic Pathogen database. - Cristina Aurrecoechea; Ana Barreto; John Brestelli; Brian P. Brunk; Shon Cade; Ryan Doherty; Steve Fischer; Bindu Gajria; Xin Gao 002; Alan R. Gingle; Gregory R. Grant; Omar S. Harb; et al. (Nucleic Acids Res., 2013)

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data. - Katharina E. Hayer; Angel D. Pizarro; Nicholas F. Lahens; John B. Hogenesch; Gregory R. Grant (Bioinform., 2015)

Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain. - Qiwen Hu; Eun Ji Kim; Jian Feng; Gregory R. Grant; Elizabeth A. Heller (PLoS Comput. Biol., 2017)

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates. - Scott S. Norton; Jorge Vaquero-Garcia; Nicholas F. Lahens; Gregory R. Grant; Yoseph Barash (Bioinform., 2018)

Comparative evaluation of full-length isoform quantification from RNA-Seq. - Dimitra Sarantopoulou; Thomas G. Brooks; Soumyashant Nayak; Antonijo Mrcela; Nicholas F. Lahens; Gregory R. Grant (BMC Bioinform., 2021)

BEERS2: RNA-Seq simulation through high fidelity in silico modeling. - Thomas G. Brooks; Nicholas F. Lahens; Antonijo Mrcela; Dimitra Sarantopoulou; Soumyashant Nayak; Amruta Naik; Shaon Sengupta; Peter S. Choi; Gregory R. Grant (Briefings Bioinform., 2024)