GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions. - Gregory W. Gundersen; Matthew R. Jones; Andrew D. Rouillard; Yan Kou; Caroline D. Monteiro; Axel S. Feldmann; Kevin S. Hu; Avi Ma'ayan (Bioinform., 2015)

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. - Andrew D. Rouillard; Gregory W. Gundersen; Nicolas F. Fernandez; Zichen Wang 002; Caroline D. Monteiro; Michael G. McDermott; Avi Ma'ayan (Database J. Biol. Databases Curation, 2016)

GEN3VA: aggregation and analysis of gene expression signatures from related studies. - Gregory W. Gundersen; Kathleen M. Jagodnik; Holly Woodland; Nicolas F. Fernandez; Kevin Sani; Anders B. Dohlman; Peter Man-Un Ung; Caroline D. Monteiro; Avner Schlessinger; Avi Ma'ayan (BMC Bioinform., 2016)

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. - Maxim V. Kuleshov; Matthew R. Jones; Andrew D. Rouillard; Nicolas F. Fernandez; Qiaonan Duan; Zichen Wang 002; Simon Koplev; Sherry L. Jenkins; Kathleen M. Jagodnik; Alexander Lachmann; Michael G. McDermott; Caroline D. Monteiro; et al. (Nucleic Acids Res., 2016)

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks. - Daniel J. B. Clarke; Maxim V. Kuleshov; Brian M. Schilder; Denis Torre; Mary E. Duffy; Alexandra B. Keenan; Alexander Lachmann; Axel S. Feldmann; Gregory W. Gundersen; Moshe C. Silverstein; Zichen Wang 002; Avi Ma'ayan (Nucleic Acids Res., 2018)

End-to-end Training of Deep Probabilistic CCA on Paired Biomedical Observations. - Gregory W. Gundersen; Bianca Dumitrascu; Jordan T. Ash; Barbara E. Engelhardt (UAI, 2019)

Latent variable modeling with random features. - Gregory W. Gundersen; Michael Minyi Zhang; Barbara E. Engelhardt (AISTATS, 2021)

Active multi-fidelity Bayesian online changepoint detection. - Gregory W. Gundersen; Diana Cai; Chuteng Zhou; Barbara E. Engelhardt; Ryan P. Adams (UAI, 2021)

Bayesian Non-linear Latent Variable Modeling via Random Fourier Features. - Michael Minyi Zhang; Gregory W. Gundersen; Barbara E. Engelhardt (CoRR, 2023)