Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis. - Grzegorz Bokota; Marta Magnowska; Tomasz Kusmierczyk; Michal Lukasik; Matylda Roszkowska; Dariusz Plewczynski (Frontiers Comput. Neurosci., 2016)

Verification of Dynamic Behaviour in Qualitative Molecular Networks Describing Gene Regulation, Signalling and Whole-cell Metabolism. - Marek Grabowski; Grzegorz Bokota; Jacek Sroka; Andrzej M. Kierzek (Fundam. Informaticae, 2018)

Dendritic Spines Taxonomy: The Functional and Structural Classification • Time-Dependent Probabilistic Model of Neuronal Activation. - Paulina Urban; Vahid Rezaei; Grzegorz Bokota; Michal Denkiewicz; Subhadip Basu; Dariusz Plewczynski (J. Comput. Biol., 2019)

The Mixture of Autoregressive Hidden Markov Models of Morphology for Dentritic Spines During Activation Process. - Paulina Urban; Vahid Rezaei Tabar; Michal Denkiewicz; Grzegorz Bokota; Nirmal Das; Subhadip Basu; Dariusz Plewczynski (J. Comput. Biol., 2020)

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies. - Grzegorz Bokota; Jacek Sroka; Subhadip Basu; Nirmal Das; Pawel Trzaskoma; Yana Yushkevich; Agnieszka Grabowska; Adriana Magalska; Dariusz Plewczynski (BMC Bioinform., 2021)