RIBER/DIBER: a software suite for crystal content analysis in the studies of protein-nucleic acid complexes. - Grzegorz Chojnowski; Janusz M. Bujnicki; Matthias Bochtler (Bioinform., 2012)

RNA Bricks - a database of RNA 3D motifs and their interactions. - Grzegorz Chojnowski; Tomasz Walen; Janusz M. Bujnicki (Nucleic Acids Res., 2014)

AlphaPulldown - a python package for protein-protein interaction screens using AlphaFold-Multimer. - Dingquan Yu; Grzegorz Chojnowski; Maria Rosenthal; Jan Kosinski (Bioinform., 2023)

RNA 3D structure modeling by fragment assembly with small-angle X-ray scattering restraints. - Grzegorz Chojnowski; Rafal Zaborowski; Marcin Magnus; Sunandan Mukherjee; Janusz M. Bujnicki (Bioinform., 2023)