Gene Function Prediction by a Combined Analysis of Gene Expression Data and Protein-protein Interaction Data. - Guanghua Xiao; Wei Pan 011 (J. Bioinform. Comput. Biol., 2005)

A Novel Approach to DNA Copy Number Data Segmentation. - Siling Wang; Yuhang Wang; Yang Xie; Guanghua Xiao (J. Bioinform. Comput. Biol., 2011)

White matter cerebral blood flow is inversely correlated with structural and functional connectivity in the human brain. - Sina Aslan; Hao Huang 016; Jinsoo Uh; Virendra Mishra; Guanghua Xiao; Matthias J. P. van Osch; Hanzhang Lu (NeuroImage, 2011)

Probe mapping across multiple microarray platforms. - Jeffrey D. Allen; Siling Wang; Min Chen 014; Luc Girard; John D. Minna; Yang Xie; Guanghua Xiao (Briefings Bioinform., 2012)

A powerful Bayesian meta-analysis method to integrate multiple gene set enrichment studies. - Min Chen 014; Miao Zang; Xinlei Wang 001; Guanghua Xiao (Bioinform., 2013)

SbacHTS: Spatial background noise correction for High-Throughput RNAi Screening. - Rui Zhong; Min Soo Kim 006; Michael A. White; Yang Xie; Guanghua Xiao (Bioinform., 2013)

Alterations in resting functional connectivity due to recent motor task. - Kuang-Chi Tung; Jinsoo Uh; Deng Mao; Feng Xu 002; Guanghua Xiao; Hanzhang Lu (NeuroImage, 2013)

Computer-Assisted Diagnosis of Lung Cancer Using Quantitative Topology Features. - Jiawen Yao; Dheeraj Ganti; Xin Luo; Guanghua Xiao; Yang Xie; Shirley Yan; Junzhou Huang (MLMI, 2015)

Imaging-genetic data mapping for clinical outcome prediction via supervised conditional Gaussian graphical model. - Xinliang Zhu; Jiawen Yao; Guanghua Xiao; Yang Xie; Jaime Rodriguez-Canales; Edwin R. Parra; Carmen Behrens; Ignacio I. Wistuba; Junzhou Huang (BIBM, 2016)

Lung cancer survival prediction from pathological images and genetic data - An integration study. - Xinliang Zhu; Jiawen Yao; Xin Luo; Guanghua Xiao; Yang Xie; Adi F. Gazdar; Junzhou Huang (ISBI, 2016)

Enhanced construction of gene regulatory networks using hub gene information. - Donghyeon Yu; Johan Lim; Xinlei Wang 001; Faming Liang; Guanghua Xiao (BMC Bioinform., 2017)

Deep integrative analysis for survival prediction. - Chenglong Huang; Albert Zhang; Guanghua Xiao (PSB, 2018)

Microvessel prediction in H&E Stained Pathology Images using fully convolutional neural networks. - Faliu Yi; Lin Yang; Shidan Wang; Lei Guo; Chenglong Huang; Yang Xie; Guanghua Xiao (BMC Bioinform., 2018)

ConvPath: A Software Tool for Lung Adenocarcinoma Digital Pathological Image Analysis Aided by Convolutional Neural Network. - Shidan Wang; Tao Wang; Lin Yang; Faliu Yi; Xin Luo; Yikun Yang; Adi F. Gazdar; Junya Fujimoto; Ignacio I. Wistuba; Bo Yao; ShinYi Lin; Yang Xie; et al. (CoRR, 2018)

Fused lasso regression for identifying differential correlations in brain connectome graphs. - Donghyeon Yu; Sang Han Lee; Johan Lim; Guanghua Xiao; Richard Cameron Craddock; Bharat B. Biswal (Stat. Anal. Data Min., 2018)

A comparative study of rank aggregation methods for partial and top ranked lists in genomic applications. - Xue Li; Xinlei Wang 001; Guanghua Xiao (Briefings Bioinform., 2019)

DIGREM: an integrated web-based platform for detecting effective multi-drug combinations. - Minzhe Zhang; Sangin Lee; Bo Yao; Guanghua Xiao; Lin Xu; Yang Xie (Bioinform., 2019)

GeNeCK: a web server for gene network construction and visualization. - Minzhe Zhang; Qiwei Li 001; Donghyeon Yu; Bo Yao; Wei Guo; Yang Xie; Guanghua Xiao (BMC Bioinform., 2019)

Discovering Clinically Meaningful Shape Features for the Analysis of Tumor Pathology Images. - Esteban Fernández Morales; Cong Zhang; Guanghua Xiao; Chul Moon; Qiwei Li 001 (CoRR, 2020)

Predicting survival outcomes using topological features of tumor pathology images. - Chul Moon; Qiwei Li 001; Guanghua Xiao (CoRR, 2020)

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning. - Jiwoong Kim; David E. Greenberg; Reed Pifer; Shuang Jiang; Guanghua Xiao; Samuel A. Shelburne; Andrew Y. Koh; Yang Xie; Xiaowei Zhan (PLoS Comput. Biol., 2020)

Spatial molecular profiling: platforms, applications and analysis tools. - Minzhe Zhang; Thomas Sheffield; Xiaowei Zhan; Qiwei Li 001; Donghan M. Yang; Yunguan Wang; Shidan Wang; Yang Xie; Tao Wang; Guanghua Xiao (Briefings Bioinform., 2021)

Assessing consistency across functional screening datasets in cancer cells. - Ling Cai; Hongyu Liu; John D. Minna; Ralph J. Deberardinis; Guanghua Xiao; Yang Xie (Bioinform., 2021)

Bayesian modeling of spatial molecular profiling data via Gaussian process. - Qiwei Li 001; Minzhe Zhang; Yang Xie; Guanghua Xiao (Bioinform., 2021)

SAFARI: shape analysis for AI-segmented images. - Esteban Fernández; Shengjie Yang; Sy Han Chiou; Chul Moon; Cong Zhang; Bo Yao; Guanghua Xiao; Qiwei Li 001 (BMC Medical Imaging, 2022)

An Adaptive Hierarchical Concatenated Network With A Robust Loss Function For Image Denoising. - Guanghua Xiao; Huibin Wang; Jie Shen 004; Zhe Chen 004; Zhen Zhang 019 (J. Grid Comput., 2022)

Contrastive Learning with Dynamic Weighting and Jigsaw Augmentation for Brain Tumor Classification in MRI. - Guanghua Xiao; Huibin Wang; Jie Shen 004; Zhe Chen 004; Zhen Zhang 019; Xiaomin Ge (Neural Process. Lett., 2023)

Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach. - Shidan Wang; Ruichen Rong; Zifan Gu; Junya Fujimoto; Xiaowei Zhan; Yang Xie; Guanghua Xiao (Comput. Methods Programs Biomed., 2023)

SegPath-YOLO: A High-Speed, High-Accuracy Pathology Image Segmentation and Tumor Microenvironment Feature Extraction Tool. - Jia Yao; Ruichen Rong; Tao Wang; Guanghua Xiao (BIBM, 2024)

BayeSMART: Bayesian clustering of multi-sample spatially resolved transcriptomics data. - Yanghong Guo; Bencong Zhu; Chen Tang; Ruichen Rong; Ying Ma; Guanghua Xiao; Lin Xu 005; Qiwei Li 001 (Briefings Bioinform., 2024)

Large language models enabled multiagent ensemble method for efficient EHR data labeling. - Jingwei Huang 002; Kuroush Nezafati; Ismael Villanueva-Miranda; Zifan Gu; Ann Marie Navar; Tingyi Wanyan; Qin Zhou; Bo Yao; Ruichen Rong; Xiaowei Zhan; Guanghua Xiao; Eric D. Peterson; et al. (CoRR, 2024)

Navigating electronic health record accuracy by examination of sex incongruent conditions. - Ling Cai; Ralph J. Deberardinis; Xiaowei Zhan; Guanghua Xiao; Yang Xie (J. Am. Medical Informatics Assoc., 2024)

Research on the hydraulic parameters and leak rate of natural gas flow in natural gas pipelines based on the methods of characteristic line and successive approximation. - Qingmin Hou; Guanghua Xiao; Fangmin Xu; Hassan Nasser Eddine (J. Comput. Methods Sci. Eng., 2024)

A critical assessment of using ChatGPT for extracting structured data from clinical notes. - Jingwei Huang 002; Donghan M. Yang; Ruichen Rong; Kuroush Nezafati; Colin Treager; Zhikai Chi; Shidan Wang; Xian Cheng; Yujia Guo; Laura J. Klesse; Guanghua Xiao; Eric D. Peterson; et al. (npj Digit. Medicine, 2024)

MedAgentGym: Training LLM Agents for Code-Based Medical Reasoning at Scale. - Ran Xu 002; Yuchen Zhuang; Yishan Zhong; Yue Yu 001; Xiangru Tang; Hang Wu; May D. Wang; Peifeng Ruan; Donghan Yang; Tao Wang 006; Guanghua Xiao; Carl Yang 001; et al. (CoRR, 2025)