Reactome - A Knowledgebase of Biological Pathways. - Esther Schmidt; Ewan Birney; David Croft 001; Bernard de Bono; Peter D'Eustachio; Marc Gillespie; Gopal Gopinath; Bijay Jassal; Suzanna Lewis; Lisa Matthews; Lincoln Stein; Imre Vastrik; et al. (OTM Workshops (1), 2006)

Reactome: An integrated expert model of human molecular processes and access toolkit. - Bernard de Bono; Imre Vastrik; Peter D'Eustachio; Esther Schmidt; Gopal Gopinath; David Croft 001; Marc Gillespie; Bijay Jassal; Suzanna Lewis; Lisa Matthews; Guanming Wu; Ewan Birney; et al. (J. Integr. Bioinform., 2007)

Reactome knowledgebase of human biological pathways and processes. - Lisa Matthews; Gopal Gopinath; Marc Gillespie; Michael Caudy; David Croft 001; Bernard de Bono; Phani V. Garapati; Jill Hemish; Henning Hermjakob; Bijay Jassal; Alexander Kanapin; Suzanna Lewis; et al. (Nucleic Acids Res., 2009)

Reactome: a database of reactions, pathways and biological processes. - David Croft 001; Gavin O'Kelly; Guanming Wu; Robin Haw; Marc Gillespie; Lisa Matthews; Michael Caudy; Phani V. Garapati; Gopal Gopinath; Bijay Jassal; Steven Jupe; Irina Kalatskaya; et al. (Nucleic Acids Res., 2011)

A controlled vocabulary for pathway entities and events. - Steven Jupe; Bijay Jassal; Mark Williams; Guanming Wu (Database J. Biol. Databases Curation, 2014)

ReactomeFIViz: the Reactome FI Cytoscape app for pathway and network-based data analysis. - Guanming Wu; Eric T. Dawson; Adrian Duong; Robin Haw; Lincoln Stein (F1000Research, 2014)

The Reactome pathway knowledgebase. - David Croft 001; Antonio Fabregat Mundo; Robin Haw; Marija Milacic; Joel Weiser; Guanming Wu; Michael Caudy; Phani V. Garapati; Marc Gillespie; Maulik R. Kamdar; Bijay Jassal; Steven Jupe; et al. (Nucleic Acids Res., 2014)

Gramene 2013: comparative plant genomics resources. - Marcela K. Monaco; Joshua C. Stein; Sushma Naithani; Sharon Wei; Palitha Dharmawardhana; Sunita Kumari; Vindhya Amarasinghe; Ken Youens-Clark; James Thomason; Justin Preece; Shiran Pasternak; Andrew Olson; et al. (Nucleic Acids Res., 2014)

The Reactome pathway Knowledgebase. - Antonio Fabregat; Konstantinos Sidiropoulos; Phani V. Garapati; Marc Gillespie; Kerstin Hausmann; Robin Haw; Bijay Jassal; Steven Jupe; Florian Korninger; Sheldon J. McKay; Lisa Matthews; Bruce May; et al. (Nucleic Acids Res., 2016)

Reactome from a WikiPathways Perspective. - Anwesha Bohler; Guanming Wu; Martina Kutmon; Leontius Adhika Pradhana; Susan L. Coort; Kristina Hanspers; Robin Haw; Alexander R. Pico; Chris T. A. Evelo (PLoS Comput. Biol., 2016)

Plant Reactome: a resource for plant pathways and comparative analysis. - Sushma Naithani; Justin Preece; Peter D'Eustachio; Parul Gupta; Vindhya Amarasinghe; Palitha Dharmawardhana; Guanming Wu; Antonio Fabregat; Justin Elser; Joel Weiser; Maria Keays; Alfonso Muñoz-Pomer Fuentes; et al. (Nucleic Acids Res., 2017)

Automation of ReactomeFIViz via CyREST API. - Fred Loney 001; Guanming Wu (F1000Research, 2018)

The Reactome Pathway Knowledgebase. - Antonio Fabregat; Steven Jupe; Lisa Matthews; Konstantinos Sidiropoulos; Marc Gillespie; Phani V. Garapati; Robin Haw; Bijay Jassal; Florian Korninger; Bruce May; Marija Milacic; Corina Duenas; et al. (Nucleic Acids Res., 2018)

Reactome graph database: Efficient access to complex pathway data. - Antonio Fabregat; Florian Korninger; Guilherme Viteri; Konstantinos Sidiropoulos; Pablo Marín-García; Peipei Ping; Guanming Wu; Lincoln Stein; Peter D'Eustachio; Henning Hermjakob (PLoS Comput. Biol., 2018)

Reactome and ORCID - fine-grained credit attribution for community curation. - Guilherme Viteri; Lisa Matthews; Thawfeek M. Varusai; Marc Gillespie; Marija Milacic; Justin Cook; Joel Weiser; Solomon Shorser; Konstantinos Sidiropoulos; Antonio Fabregat; Robin Haw; Guanming Wu; et al. (Database J. Biol. Databases Curation, 2019)

VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions. - Edison Ong; Peter Sun; Kimberly Berke; Jie Zheng 001; Guanming Wu; Yongqun He (BMC Bioinform., 2019)

The reactome pathway knowledgebase. - Bijay Jassal; Lisa Matthews; Guilherme Viteri; Chuqiao Gong; Pascual Lorente; Antonio Fabregat; Konstantinos Sidiropoulos; Justin Cook; Marc Gillespie; Robin Haw; Fred Loney 001; Bruce May; et al. (Nucleic Acids Res., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

Perform Pathway Enrichment Analysis Using ReactomeFIViz. - Robin Haw; Fred Loney 001; Edison Ong; Yongqun He; Guanming Wu (Protein-Protein Interaction Networks, 2020)

CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature. - Anthony Huffman; Anna Maria Masci; Jie Zheng 001; Nasim Sanati; Timothy Brunson; Guanming Wu; Yongqun He (J. Biomed. Semant., 2021)

Leveraging biochemical reactions to unravel functional impacts of cancer somatic variants affecting protein interaction interfaces. - Francesco Raimondi 001; Joshua G. Burkhart; Matthew J. Betts; Robert B. Russell; Guanming Wu (F1000Research, 2021)

The reactome pathway knowledgebase 2022. - Marc Gillespie; Bijay Jassal; Ralf Stephan; Marija Milacic; Karen Rothfels; Andrea Senff-Ribeiro; Johannes Griss; Cristoffer Sevilla; Lisa Matthews; Chuqiao Gong; Chuan Deng; Thawfeek M. Varusai; et al. (Nucleic Acids Res., 2022)

Ontology-based Representation and Analysis of Conditional Vaccine Immune Responses Using Omics Data. - Anthony Huffman; Edison Ong; Timothy Brunson; Nasim Sanati; Jie Zheng 001; Anna Maria Masci; Guanming Wu; Yongqun He (ICBO, 2023)

Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease. - Joshua G. Burkhart; Guanming Wu; Xubo Song; Francesco Raimondi 001; Shannon K. McWeeney; Melissa H. Wong; Youping Deng (Patterns, 2023)

Data Valuation with Gradient Similarity. - Nathaniel J. Evans; Gordon B. Mills; Guanming Wu; Xubo Song; Shannon K. McWeeney (CoRR, 2024)

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. - Marija Orlic-Milacic; Karen Rothfels; Lisa Matthews; Adam J. Wright; Bijay Jassal; Veronica Shamovsky; Quang M. Trinh; Marc Gillespie; Cristoffer Sevilla; Krishna Tiwari; Eliot Ragueneau; Chuqiao Gong; et al. (Database J. Biol. Databases Curation, 2024)

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes. - Marija Orlic-Milacic; Karen Rothfels; Lisa Matthews; Adam J. Wright; Bijay Jassal; Veronica Shamovsky; Quang M. Trinh; Marc Gillespie; Cristoffer Sevilla; Krishna Tiwari; Eliot Ragueneau; Chuqiao Gong; et al. (Zenodo, 2024)