scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data. - Daniel Osório 004; Yan Zhong 003; Guanxun Li; Jianhua Z. Huang; James J. Cai (Patterns, 2020)

scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation. - Daniel Osório 004; Yan Zhong 003; Guanxun Li; Qian Xu; Yongjian Yang 003; Yanan Tian; Robert S. Chapkin; Jianhua Z. Huang; James J. Cai (Patterns, 2022)

Fast Replica Exchange Stochastic Gradient Langevin Dynamics. - Guanxun Li; Guang Lin 001; Zecheng Zhang; Quan Zhou (CoRR, 2023)

Interpretable modeling of time-resolved single-cell gene-protein expression with CrossmodalNet. - Yongjian Yang 003; Yu-Te Lin; Guanxun Li; Yan Zhong 003; Qian Xu; James J. Cai (Briefings Bioinform., 2023)

Segmenting Watermarked Texts From Language Models. - Xingchi Li 002; Guanxun Li; Xianyang Zhang (NeurIPS, 2024)

Bayesian Multi-Task Variable Selection with an Application to Differential DAG Analysis. - Guanxun Li; Quan Zhou (J. Comput. Graph. Stat., 2024)

A Likelihood Based Approach for Watermark Detection. - Xingchi Li 002; Guanxun Li; Xianyang Zhang (AISTATS, 2025)