Improving language model perplexity and recognition accuracy for medical dictations via within-domain interpolation with literal and semi-literal corpora. - Guergana Savova; Michael Schonwetter; Sergey V. Pakhomov (INTERSPEECH, 2000)

Testing the Generalizability of the ISO Model for Nursing Diagnoses. - Marcelline R. Harris; Hyeoneui Kim; Lori Rhudy; Guergana Savova; Christopher G. Chute (AMIA, 2003)

A Data-Driven Approach for Extracting "the Most Specific Term" for Ontology Development. - Guergana K. Savova; Marcelline R. Harris; Thomas M. Johnson; Serguei V. S. Pakhomov; Christopher G. Chute (AMIA, 2003)

Prosodic features of four types of disfluencies. - Guergana K. Savova; Joan Bachenko (DiSS, 2003)

Designing for errors: similarities and differences of disfluency rates and prosodic characteristics across domains. - Guergana K. Savova; Joan Bachenko (INTERSPEECH, 2003)

A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. - Marcelline R. Harris; Guergana K. Savova; Thomas M. Johnson; Christopher G. Chute (J. Biomed. Informatics, 2003)

Using Volunteers to Annotate Biomedical Corpora for Anaphora Resolution. - Shana Watters; Brian McInnes; David McKoskey; Tim Miller 002; Daniel Boley; Maria L. Gini; William Schuler; A. Polukeyeva; Jeanette K. Gundel; Sergey V. Pakhomov; Guergana Savova (AAAI Spring Symposium: Knowledge Collection from Volunteer Contributors, 2005)

Frame Semantics and the Domain of Functioning, Disability and Health. - Guergana Savova; Marcelline R. Harris; Serguei Pakhomov; Christopher G. Chute (AMIA, 2005)

Building and Evaluating Annotated Corpora for Medical NLP Systems. - Philip V. Ogren; Guergana Savova; James D. Buntrock; Christopher G. Chute (AMIA, 2006)

Conditional Random Fields and Support Vector Machines for Disorder Named Entity Recognition in Clinical Texts. - Dingcheng Li; Guergana Savova; Karin Kipper Schuler (BioNLP, 2008)

Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. - Philip V. Ogren; Guergana K. Savova; Christopher G. Chute (LREC, 2008)

System Evaluation on a Named Entity Corpus from Clinical Notes. - Karin Schuler; Vinod Kaggal; James J. Masanz; Philip V. Ogren; Guergana K. Savova (LREC, 2008)

Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification. - Guergana K. Savova; Philip V. Ogren; Patrick H. Duffy; James D. Buntrock; Christopher G. Chute (J. Am. Medical Informatics Assoc., 2008)

Word sense disambiguation across two domains: Biomedical literature and clinical notes. - Guergana K. Savova; Anni Coden; Igor L. Sominsky; Rie Johnson; Philip V. Ogren; Piet C. de Groen; Christopher G. Chute (J. Biomed. Informatics, 2008)

Towards Temporal Relation Discovery from the Clinical Narrative. - Guergana Savova; Steven Bethard; William F. Styler IV; James H. Martin; Martha Palmer; James J. Masanz; Wayne H. Ward (AMIA, 2009)

Mayo Clinic Smoking Status Classification System: Extensions and Improvements. - Sunghwan Sohn; Guergana K. Savova (AMIA, 2009)

Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model. - Anni Coden; Guergana K. Savova; Igor L. Sominsky; Michael A. Tanenblatt; James J. Masanz; Karin Schuler; James W. Cooper; Wei Guan; Piet C. de Groen (J. Biomed. Informatics, 2009)

An architecture for complex clinical question answering. - Rodney D. Nielsen; James J. Masanz; Philip V. Ogren; Wayne H. Ward; James H. Martin; Guergana K. Savova; Martha Palmer (IHI, 2010)

Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques. - Cui Tao; Harold R. Solbrig; Deepak K. Sharma; Wei-Qi Wei; Guergana K. Savova; Christopher G. Chute (ISWC (2), 2010)

Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. - Iftikhar J. Kullo; Jin Fan; Jyotishman Pathak; Guergana K. Savova; Zeenat Ali; Christopher G. Chute (J. Am. Medical Informatics Assoc., 2010)

Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. - Guergana K. Savova; James J. Masanz; Philip V. Ogren; Jiaping Zheng; Sunghwan Sohn; Karin Kipper Schuler; Christopher G. Chute (J. Am. Medical Informatics Assoc., 2010)

Discerning Tumor Status from Unstructured MRI Reports - Completeness of Information in Existing Reports and Utility of Automated Natural Language Processing. - Lionel Tim-Ee Cheng; Jiaping Zheng; Guergana K. Savova; Bradley James Erickson (J. Digit. Imaging, 2010)

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. - Wendy Webber Chapman; Prakash M. Nadkarni; Lynette Hirschman; Leonard W. D'Avolio; Guergana K. Savova; Özlem Uzuner (J. Am. Medical Informatics Assoc., 2011)

Anaphoric relations in the clinical narrative: corpus creation. - Guergana K. Savova; Wendy Webber Chapman; Jiaping Zheng; Rebecca S. Crowley (J. Am. Medical Informatics Assoc., 2011)

Drug side effect extraction from clinical narratives of psychiatry and psychology patients. - Sunghwan Sohn; Jean-Pierre A. Kocher; Christopher G. Chute; Guergana K. Savova (J. Am. Medical Informatics Assoc., 2011)

Coreference resolution: A review of general methodologies and applications in the clinical domain. - Jiaping Zheng; Wendy Webber Chapman; Rebecca S. Crowley; Guergana K. Savova (J. Biomed. Informatics, 2011)

Active Learning for Coreference Resolution. - Timothy A. Miller; Dmitriy Dligach; Guergana Savova (BioNLP@HLT-NAACL, 2012)

Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. - Guergana K. Savova; Janet E. Olson; Sean P. Murphy; Victoria L. Cafourek; Fergus J. Couch; Matthew P. Goetz; James N. Ingle; Vera J. Suman; Christopher G. Chute; Richard M. Weinshilboum (J. Am. Medical Informatics Assoc., 2012)

A system for coreference resolution for the clinical narrative. - Jiaping Zheng; Wendy Webber Chapman; Timothy A. Miller; Chen Lin 002; Rebecca S. Crowley; Guergana K. Savova (J. Am. Medical Informatics Assoc., 2012)

Anaphoric reference in clinical reports: Characteristics of an annotated corpus. - Wendy Webber Chapman; Guergana K. Savova; Jiaping Zheng; Melissa Tharp; Rebecca S. Crowley (J. Biomed. Informatics, 2012)

Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project. - Susan Rea; Jyotishman Pathak; Guergana K. Savova; Thomas A. Oniki; Les Westberg; Calvin E. Beebe; Cui Tao; Craig G. Parker; Peter J. Haug; Stanley M. Huff; Christopher G. Chute (J. Biomed. Informatics, 2012)

Discovering Body Site and Severity Modifiers in Clinical Texts. - Dmitriy Dligach; Timothy A. Miller; Guergana Savova (AMIA, 2013)

Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records. - Chen Lin 002; Elizabeth W. Karlson; Helena Canhão; Timothy A. Miller; Dmitriy Dligach; Pei J. Chen; Raúl N. Pérez; Yuanyuan Shen; Michael E. Weinblatt; Nancy A. Shadick; Robert M. Plenge; Guergana Savova (AMIA, 2013)

Discovering Time Expressions in Clinical Text. - Timothy A. Miller; Dmitriy Dligach; Steven Bethard; Sameer Pradhan; Chen Lin 002; Guergana K. Savova (AMIA, 2013)

Panel: Shared Resources, Shared Code, and Shared Activities in Clinical Natural Language Processing. - Guergana Savova; Wendy Webber Chapman; Noemie Elhadad; Martha Palmer (AMIA, 2013)

Discovering Temporal Narrative Containers in Clinical Text. - Timothy Miller 002; Steven Bethard; Dmitriy Dligach; Sameer Pradhan; Chen Lin 002; Guergana Savova (BioNLP@ACL, 2013)

Task 2: ShARe/CLEF eHealth Evaluation Lab 2013. - Danielle L. Mowery; Brett R. South; Lee M. Christensen; Laura-Maria Murtola; Sanna Salanterä; Hanna Suominen; David Martínez 001; Noémie Elhadad; Sameer Pradhan; Guergana K. Savova; Wendy W. Chapman (CLEF (Working Notes), 2013)

Task 1: ShARe/CLEF eHealth Evaluation Lab 2013. - Sameer Pradhan; Noémie Elhadad; Brett R. South; David Martínez 001; Lee M. Christensen; Amy Vogel; Hanna Suominen; Wendy W. Chapman; Guergana K. Savova (CLEF (Working Notes), 2013)

Overview of the ShARe/CLEF eHealth Evaluation Lab 2013. - Hanna Suominen; Sanna Salanterä; Sumithra Velupillai; Wendy Webber Chapman; Guergana K. Savova; Noemie Elhadad; Sameer Pradhan; Brett R. South; Danielle L. Mowery; Gareth J. F. Jones; Johannes Leveling; Liadh Kelly; et al. (CLEF, 2013)

Active Learning for Phenotyping Tasks. - Dmitriy Dligach; Timothy Miller 002; Guergana Savova (RANLP (Medicine and Biology), 2013)

A common type system for clinical natural language processing. - Stephen T. Wu; Vinod Kaggal; Dmitriy Dligach; James J. Masanz; Pei J. Chen; Lee Becker; Wendy Webber Chapman; Guergana K. Savova; Hongfang Liu; Christopher G. Chute (J. Biomed. Semant., 2013)

Towards comprehensive syntactic and semantic annotations of the clinical narrative. - Daniel Albright; Arrick Lanfranchi; Anwen Fredriksen; William F. Styler IV; Colin Warner; Jena D. Hwang; Jinho D. Choi; Dmitriy Dligach; Rodney D. Nielsen; James H. Martin; Wayne H. Ward; Martha Palmer; et al. (J. Am. Medical Informatics Assoc., 2013)

Large-scale evaluation of automated clinical note de-identification and its impact on information extraction. - Louise Deléger; Katalin Molnár; Guergana Savova; Fei Xia 004; Todd Lingren; Qi Li 004; Keith Marsolo; Anil G. Jegga; Megan Kaiser; Laura Stoutenborough; Imre Solti (J. Am. Medical Informatics Assoc., 2013)

Improved de-identification of physician notes through integrative modeling of both public and private medical text. - Andrew J. McMurry; Britt Fitch; Guergana Savova; Isaac S. Kohane; Ben Y. Reis (BMC Medical Informatics Decis. Mak., 2013)

Descending-Path Convolution Kernel for Syntactic Structures. - Chen Lin 002; Timothy Miller 002; Alvin Kho; Steven Bethard; Dmitriy Dligach; Sameer Pradhan; Guergana Savova (ACL (2), 2014)

Narrative Event and Temporal Relation Visualization Tool. - Sean Finan; Piet C. de Groen; Guergana Savova (AMIA, 2014)

Developing a Section Labeler for Clinical Documents. - Peter J. Haug; Xinzi Wu; Jeffrey P. Ferraro; Guergana Savova; Stanley M. Huff; Christopher G. Chute (AMIA, 2014)

Clinical Natural Language Processing in Languages Other Than English. - Aurélie Névéol; Hercules Dalianis; Guergana Savova; Pierre Zweigenbaum (AMIA, 2014)

Disease/Disorder Semantic Template Filling - Information Extraction Challenge in the ShARe/CLEF eHealth Evaluation Lab 2014. - Sumithra Velupillai; Danielle L. Mowery; Lee M. Christensen; Noemie Elhadad; Sameer Pradhan; Guergana K. Savova; Wendy W. Chapman (AMIA, 2014)

Task 2: ShARe/CLEF eHealth Evaluation Lab 2014. - Danielle L. Mowery; Sumithra Velupillai; Brett R. South; Lee M. Christensen; David Martínez 001; Liadh Kelly; Lorraine Goeuriot; Noémie Elhadad; Sameer Pradhan; Guergana K. Savova; Wendy W. Chapman (CLEF (Working Notes), 2014)

SemEval-2014 Task 7: Analysis of Clinical Text. - Sameer Pradhan; Noémie Elhadad; Wendy W. Chapman; Suresh Manandhar; Guergana Savova (SemEval@COLING, 2014)

Discovering body site and severity modifiers in clinical texts. - Dmitriy Dligach; Steven Bethard; Lee Becker; Timothy Miller 002; Guergana K. Savova (J. Am. Medical Informatics Assoc., 2014)

Temporal Annotation in the Clinical Domain. - William F. Styler IV; Steven Bethard; Sean Finan; Martha Palmer; Sameer Pradhan; Piet C. de Groen; Bradley James Erickson; Timothy Miller 002; Chen Lin 002; Guergana K. Savova; James Pustejovsky (Trans. Assoc. Comput. Linguistics, 2014)

Semi-supervised Learning for Phenotyping Tasks. - Dmitriy Dligach; Timothy A. Miller; Guergana Savova (AMIA, 2015)

Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records. - Uri Kartoun; Vishesh Kumar; Su-Chun Cheng; Sheng Yu 002; Katherine P. Liao; Elizabeth W. Karlson; Ashwin N. Ananthakrishnan; Zongqi Xia; Vivian S. Gainer; Andrew Cagan; Guergana Savova; Pei J. Chen; et al. (AMIA, 2015)

Robust Sentence Segmentation for Clinical Text. - Timothy A. Miller; Sean Finan; Dmitriy Dligach; Guergana Savova (AMIA, 2015)

Natural Language Processing for Phenotype Extraction: Challenges in Extraction and Representation. - Guergana Savova; Rebecca S. Jacobson; Joshua C. Denny; Nicole L. Washington; Harry Hochheiser (AMIA, 2015)

Extracting Time Expressions from Clinical Text. - Timothy Miller 002; Steven Bethard; Dmitriy Dligach; Chen Lin 002; Guergana Savova (BioNLP@IJCNLP, 2015)

SemEval-2015 Task 6: Clinical TempEval. - Steven Bethard; Leon Derczynski; Guergana Savova; James Pustejovsky; Marc Verhagen (SemEval@NAACL-HLT, 2015)

SemEval-2015 Task 14: Analysis of Clinical Text. - Noémie Elhadad; Sameer Pradhan; Sharon Lipsky Gorman; Suresh Manandhar; Wendy W. Chapman; Guergana K. Savova (SemEval@NAACL-HLT, 2015)

Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. - Chen Lin 002; Elizabeth W. Karlson; Dmitriy Dligach; Monica P. Ramirez; Timothy A. Miller; Huan Mo; Natalie S. Braggs; Andrew Cagan; Vivian S. Gainer; Joshua C. Denny; Guergana K. Savova (J. Am. Medical Informatics Assoc., 2015)

Evaluating the state of the art in disorder recognition and normalization of the clinical narrative. - Sameer Pradhan; Noémie Elhadad; Brett R. South; David Martínez 001; Lee M. Christensen; Amy Vogel; Hanna Suominen; Wendy W. Chapman; Guergana Savova (J. Am. Medical Informatics Assoc., 2015)

Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. - Stéphane M. Meystre; Hongfang Liu; Rong Xu; Sivaram Arabandi; Kavishwar B. Wagholikar; Jon D. Patrick; Guergana K. Savova; Chunhua Weng; Pierre Zweigenbaum; Dina Demner-Fushman; Özlem Uzuner; Hua Xu 001 (AMIA, 2016)

Feature Portability in Cross-domain Clinical Coreference. - Timothy A. Miller; Dmitriy Dligach; Chen Lin 002; Steven Bethard; Guergana Savova (AMIA, 2016)

Improving Temporal Relation Extraction with Training Instance Augmentation. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Steven Bethard; Guergana Savova (BioNLP@ACL, 2016)

Unsupervised Document Classification with Informed Topic Models. - Timothy Miller 002; Dmitriy Dligach; Guergana Savova (BioNLP@ACL, 2016)

SemEval-2016 Task 12: Clinical TempEval. - Steven Bethard; Guergana Savova; Wei-Te Chen; Leon Derczynski; James Pustejovsky; Marc Verhagen (SemEval@NAACL-HLT, 2016)

Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary Pediatric Medical Centers. - Cassandra Brady; Bahram Namjou; Stephanie Kennebeck; Jonathan Bickel; Nandan Patibandla; Yizhao Ni; Sara Van Driest; Lixin Chen; Ashton Roach; Beth Cobb; Jacqueline Kirby; Joshua C. Denny; et al. (Appl. Clin. Inform., 2016)

Normalizing acronyms and abbreviations to aid patient understanding of clinical texts: ShARe/CLEF eHealth Challenge 2013, Task 2. - Danielle L. Mowery; Brett R. South; Lee M. Christensen; Jianwei Leng; Laura-Maria Peltonen; Sanna Salanterä; Hanna Suominen; David Martínez 001; Sumithra Velupillai; Noémie Elhadad; Guergana Savova; Sameer Pradhan; et al. (J. Biomed. Semant., 2016)

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. - Jacqueline Kirby; Peter Speltz; Luke V. Rasmussen; Melissa A. Basford; Omri Gottesman; Peggy L. Peissig; Jennifer A. Pacheco; Gerard Tromp; Jyotishman Pathak; David S. Carrell; Stephen B. Ellis; Todd Lingren; et al. (J. Am. Medical Informatics Assoc., 2016)

Multilayered temporal modeling for the clinical domain. - Chen Lin 002; Dmitriy Dligach; Timothy A. Miller; Steven Bethard; Guergana K. Savova (J. Am. Medical Informatics Assoc., 2016)

An information model for computable cancer phenotypes. - Harry Hochheiser; Melissa Castine; David Harris 004; Guergana Savova; Rebecca S. Jacobson (BMC Medical Informatics Decis. Mak., 2016)

Recurrent Neural Network Architectures for Event Extraction from Italian Medical Reports. - Natalia Viani; Timothy A. Miller; Dmitriy Dligach; Steven Bethard; Carlo Napolitano; Silvia G. Priori; Riccardo Bellazzi; Lucia Sacchi; Guergana K. Savova (AIME, 2017)

Clinical Natural Language Processing in Languages Other Than English. - Aurélie Névéol; Noémie Elhadad; Sumithra Velupillai; Hua Xu 001; Guergana Savova (AMIA, 2017)

DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. - Guergana Savova; Eugene Tseytlin; Sean Finan; Melissa Castine; Timothy A. Miller; Olga Medvedeva; David Harris 004; Harry Hochheiser; Chen Lin 002; Girish Chavan; Rebecca Jacobson (AMIA, 2017)

Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Steven Bethard; Guergana Savova (BioNLP, 2017)

Unsupervised Domain Adaptation for Clinical Negation Detection. - Timothy A. Miller; Steven Bethard; Hadi Amiri; Guergana Savova (BioNLP, 2017)

Neural Temporal Relation Extraction. - Dmitriy Dligach; Timothy Miller 002; Chen Lin 002; Steven Bethard; Guergana Savova (EACL (2), 2017)

Repeat before Forgetting: Spaced Repetition for Efficient and Effective Training of Neural Networks. - Hadi Amiri; Timothy Miller 002; Guergana Savova (EMNLP, 2017)

SemEval-2017 Task 12: Clinical TempEval. - Steven Bethard; Guergana Savova; Martha Palmer; James Pustejovsky (SemEval@ACL, 2017)

Towards generalizable entity-centric clinical coreference resolution. - Timothy Miller 002; Dmitriy Dligach; Steven Bethard; Chen Lin 002; Guergana Savova (J. Biomed. Informatics, 2017)

Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Hadi Amiri; Steven Bethard; Guergana Savova (Louhi@EMNLP, 2018)

Toward Large-scale and Multi-facet Analysis of First Person Alcohol Drinking. - Hadi Amiri; Kara M. Magane; Lauren E. Wisk; Guergana Savova; Elissa R. Weitzman (AMIA, 2018)

ADEPT: An End-to-End System for High-Throughput Pharmacovigilance. - Alon Geva; Jason P. Stedman; Guergana Savova; Chen Lin 002; Shannon F. Manzi; Paul Avillach; Kenneth D. Mandl (AMIA, 2018)

Women in AMIA - Resources for Emerging Leaders. - Guergana Savova; Merida L. Johns; Nancy M. Lorenzi; Patricia F. Brennan; Rebecca Crowley Jacobson (AMIA, 2018)

Computable Longitudinal Patient Trajectories. - Jeremy L. Warner; Guergana Savova; Noemie Elhadad; Lisa Bastarache; David Gotz (AMIA, 2018)

Spotting Spurious Data with Neural Networks. - Hadi Amiri; Timothy Miller 002; Guergana Savova (NAACL-HLT, 2018)

Clinical Natural Language Processing in languages other than English: opportunities and challenges. - Aurélie Névéol; Hercules Dalianis; Sumithra Velupillai; Guergana Savova; Pierre Zweigenbaum (J. Biomed. Semant., 2018)

Cross-document coreference: An approach to capturing coreference without context. - Kristin Wright-Bettner; Martha Palmer; Guergana Savova; Piet C. de Groen; Timothy Miller 002 (LOUHI@EMNLP, 2019)

Supervised methods to extract clinical events from cardiology reports in Italian. - Natalia Viani; Timothy A. Miller; Carlo Napolitano; Silvia G. Priori; Guergana K. Savova; Riccardo Bellazzi; Lucia Sacchi (J. Biomed. Informatics, 2019)

Extracting Relations between Radiotherapy Treatment Details. - Danielle S. Bitterman; Timothy Miller 002; David Harris 004; Chen Lin 002; Sean Finan; Jeremy L. Warner; Raymond H. Mak; Guergana Savova (ClinicalNLP@EMNLP, 2020)

Defining and Learning Refined Temporal Relations in the Clinical Narrative. - Kristin Wright-Bettner; Chen Lin 002; Timothy Miller 002; Steven Bethard; Dmitriy Dligach; Martha Palmer; James H. Martin; Guergana Savova (LOUHI@EMNLP, 2020)

Training Women for Leadership in Informatics and Digital Health: A Report from the Inaugural Women in AMIA Leadership Program. - Wendy W. Chapman; Adela Grando; Merida L. Johns; Guergana Savova; Maia Hightower (AMIA, 2020)

De-Identification of Clinical Text: Stakeholders' Perspectives and Acceptance of Automatic De-Identification. - Stéphane M. Meystre; Jonathan C. Silverstein; Guergana Savova; Valentina Petkov; Bradley A. Malin (AMIA, 2020)

A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Farig Sadeque; Steven Bethard; Guergana Savova (BioNLP, 2020)

Mining Misdiagnosis Patterns from Biomedical Literature. - Cindy Li; Elizabeth Chen; Guergana Savova; Hamish Fraser 001; Carsten Eickhoff (CoRR, 2020)

Diagnosis Prevalence vs. Efficacy in Machine-learning Based Diagnostic Decision Support. - Gil Alon; Elizabeth Chen; Guergana Savova; Carsten Eickhoff (CoRR, 2020)

Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources. - Alon Geva; Steven H. Abman; Shannon F. Manzi; Dunbar D. Ivy; Mary Mullen; John Griffin; Chen Lin 002; Guergana K. Savova; Kenneth D. Mandl (J. Am. Medical Informatics Assoc., 2020)

Does BERT need domain adaptation for clinical negation detection? - Chen Lin 002; Steven Bethard; Dmitriy Dligach; Farig Sadeque; Guergana Savova; Timothy A. Miller (J. Am. Medical Informatics Assoc., 2020)

EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain. - Chen Lin 002; Timothy Miller 002; Dmitriy Dligach; Steven Bethard; Guergana Savova (BioNLP@NAACL-HLT, 2021)

DeepPhe: Natural Language Processing Tools for Cancer Research and Surveillance. - Harry Hochheiser; Sean Finan; Zhou Yuan; John D. Levander; Eric B. Durbin; Isaac Hands; Ramakanth Kavuluru; Jeremy L. Warner; Guergana Savova (AMIA, 2022)

Textual Entailment for Temporal Dependency Graph Parsing. - Jiarui Yao; Steven Bethard; Kristin Wright-Bettner; Eli Goldner; David Harris 004; Guergana Savova (ClinicalNLP@ACL, 2023)

Two-Stage Fine-Tuning for Improved Bias and Variance for Large Pretrained Language Models. - Lijing Wang 001; Yingya Li; Timothy Miller 002; Steven Bethard; Guergana Savova (ACL (1), 2023)

End-to-end clinical temporal information extraction with multi-head attention. - Timothy Miller 002; Steven Bethard; Dmitriy Dligach; Guergana Savova (BioNLP@ACL, 2023)

Measuring Pointwise mathcalV-Usable Information In-Context-ly. - Sheng Lu; Shan Chen 004; Yingya Li; Danielle S. Bitterman; Guergana Savova; Iryna Gurevych (EMNLP (Findings), 2023)

Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy. - Shan Chen 004; Marco Guevara; Nicolas Ramirez; Arpi Murray; Jeremy L. Warner; Hugo J. W. L. Aerts; Timothy A. Miller; Guergana K. Savova; Raymond H. Mak; Danielle S. Bitterman (CoRR, 2023)

Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification. - Shan Chen 004; Yingya Li; Sheng Lu; Hoang Van; Hugo J. W. L. Aerts; Guergana K. Savova; Danielle S. Bitterman (CoRR, 2023)

Large Language Models to Identify Social Determinants of Health in Electronic Health Records. - Marco Guevara; Shan Chen 004; Spencer Thomas; Tafadzwa L. Chaunzwa; Idalid Franco; Benjamin H. Kann; Shalini Moningi; Jack M. Qian; Madeleine Goldstein; Susan Harper; Hugo J. W. L. Aerts; Guergana K. Savova; et al. (CoRR, 2023)

Measuring Pointwise $ mathcal{V}$-Usable Information In-Context-ly. - Sheng Lu; Shan Chen 004; Yingya Li; Danielle S. Bitterman; Guergana Savova; Iryna Gurevych (CoRR, 2023)

The impact of using an AI chatbot to respond to patient messages. - Shan Chen 004; Marco Guevara; Shalini Moningi; Frank Hoebers; Hesham Elhalawani; Benjamin H. Kann; Fallon E. Chipidza; Jonathan Leeman; Hugo J. W. L. Aerts; Timothy A. Miller; Guergana K. Savova; Raymond H. Mak; et al. (CoRR, 2023)

Improving model transferability for clinical note section classification models using continued pretraining. - Weipeng Zhou; Meliha Yetisgen; Majid Afshar; Yanjun Gao; Guergana Savova; Timothy A. Miller (J. Am. Medical Informatics Assoc., 2023)

Adapting Abstract Meaning Representation Parsing to the Clinical Narrative - the SPRING THYME parser. - Jon Z. Cai; Kristin Wright-Bettner; Martha Palmer; Guergana Savova; James H. Martin (ClinicalNLP@NAACL, 2024)

Overview of the 2024 Shared Task on Chemotherapy Treatment Timeline Extraction. - Jiarui Yao; Harry Hochheiser; Wonjin Yoon; Eli Goldner; Guergana Savova (ClinicalNLP@NAACL, 2024)

Artificial Intelligence in the Legal Field: Law Students Perspective. - Daniela Andreeva; Guergana Savova (CoRR, 2024)

Evaluating the ChatGPT family of models for biomedical reasoning and classification. - Shan Chen 004; Yingya Li; Sheng Lu; Hoang Van; Hugo J. W. L. Aerts; Guergana K. Savova; Danielle S. Bitterman (J. Am. Medical Informatics Assoc., 2024)

Large language models to identify social determinants of health in electronic health records. - Marco Guevara; Shan Chen 004; Spencer Thomas; Tafadzwa L. Chaunzwa; Idalid Franco; Benjamin H. Kann; Shalini Moningi; Jack M. Qian; Madeleine Goldstein; Susan Harper; Hugo J. W. L. Aerts; Paul J. Catalano; et al. (npj Digit. Medicine, 2024)

WorldMedQA-V: a multilingual, multimodal medical examination dataset for multimodal language models evaluation. - João Matos; Shan Chen 004; Siena Placino; Yingya Li; Juan Carlos Climent Pardo; Daphna Idan; Takeshi Tohyama; David S. Restrepo; Luis Filipe Nakayama; Jose M. M. Pascual-Leone; Guergana K. Savova; Hugo J. W. L. Aerts; et al. (NAACL (Findings), 2025)

Identifying task groupings for multi-task learning using pointwise V-usable information. - Yingya Li; Timothy A. Miller; Steven Bethard; Guergana Savova (J. Biomed. Informatics, 2025)

Aspect-Oriented Summarization for Psychiatric Short-Term Readmission Prediction. - Wonjin Yoon; Boyu Ren; Spencer Thomas; Chanwhi Kim; Guergana Savova; Mei-Hua Hall; Timothy Miller 002 (CoRR, 2025)

Assessing the Macro and Micro Effects of Random Seeds on Fine-Tuning Large Language Models. - Hao Zhou; Guergana Savova; Lijing Wang 001 (CoRR, 2025)