Enhancing Cancer Gene Prediction through Aligned Fusion of Multiple PPI Networks Using Graph Transformer Models. - Zebei Han; Gufeng Yu; Yang Yang 030 (BIBM, 2023)

MIGGRI: A multi-instance graph neural network model for inferring gene regulatory networks for Drosophila from spatial expression images. - Yuyang Huang; Gufeng Yu; Yang Yang 030 (PLoS Comput. Biol., 2023)

Prediction of chemical reaction yields with large-scale multi-view pre-training. - Runhan Shi; Gufeng Yu; Xiaohong Huo; Yang Yang 030 (J. Cheminformatics, 2024)

Machine Learning for Reaction Performance Prediction in Allylic Substitution Enhanced by Automatic Extraction of a Substrate-Aware Descriptor. - Gufeng Yu; Xi Wang; Yichong Luo; Guanlin Li; Rui Ding; Runhan Shi; Xiaohong Huo; Yang Yang 030 (J. Chem. Inf. Model., 2025)

Clc-db: an open-source online database of chiral ligands and catalysts. - Gufeng Yu; Kaiwen Yu; Xi Wang; Chenxi Zhang; Yicong Luo; Xiaohong Huo; Yang Yang 030 (J. Cheminformatics, 2025)