GraphTGI: an attention-based graph embedding model for predicting TF-target gene interactions. - Zhihua Du; Yang-Han Wu; Yu-An Huang; Jie Chen 027; Gui-Qing Pan; Lun Hu; Zhu-Hong You; Jian-Qiang Li 001 (Briefings Bioinform., 2022)

Heterogeneous graph embedding model for predicting interactions between TF and target gene. - Yu-An Huang; Gui-Qing Pan; Jia Wang 008; Jian-Qiang Li 001; Jie Chen 027; Yang-Han Wu (Bioinform., 2022)

Deep-USIpred: identifying substrates of ubiquitin protein ligases E3 and deubiquitinases with pretrained protein embedding and bayesian neural network. - Jia Wang 008; Gui-Qing Pan; Jian-Qiang Li 001; Xue-Qun Shang 001; Zhu-Hong You; Yu-An Huang (BIBM, 2023)