ELMo4m6A: A Contextual Language Embedding-Based Predictor for Detecting RNA N6-Methyladenosine Sites. - Yongxian Fan; Guicong Sun; Xiaoyong Pan (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

IHCP: interpretable hepatitis C prediction system based on black-box machine learning models. - Yongxian Fan; Xiqian Lu; Guicong Sun (BMC Bioinform., 2023)

DeepASDPred: a CNN-LSTM-based deep learning method for Autism spectrum disorders risk RNA identification. - Yongxian Fan; Hui Xiong; Guicong Sun (BMC Bioinform., 2023)

EGPDI: identifying protein-DNA binding sites based on multi-view graph embedding fusion. - Mengxin Zheng; Guicong Sun; Xueping Li; Yongxian Fan (Briefings Bioinform., 2024)

iProL: identifying DNA promoters from sequence information based on Longformer pre-trained model. - Binchao Peng; Guicong Sun; Yongxian Fan (BMC Bioinform., 2024)

iEnhancer-DS: Attention-based improved densenet for identifying enhancers and their strength. - Yongxian Fan; Chen Wang; Guicong Sun (Comput. Biol. Chem., 2025)

MLC-DTA: Drug-target affinity prediction based on multi-level contrastive learning and equivariant graph neural networks. - Mengxin Zheng; Guicong Sun; Yongxian Fan (Neurocomputing, 2025)