Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity. - Lorenzo Asti; Guido Uguzzoni; Paolo Marcatili; Andrea Pagnani (PLoS Comput. Biol., 2016)

MIIC online: a web server to reconstruct causal or non-causal networks from non-perturbative data. - Nadir Sella; Louis Verny; Guido Uguzzoni; Séverine Affeldt; Hervé Isambert (Bioinform., 2018)

Learning clinical networks from medical records based on information estimates in mixed-type data. - Vincent Cabeli; Louis Verny; Nadir Sella; Guido Uguzzoni; Marc Verny; Hervé Isambert (PLoS Comput. Biol., 2020)

Inference and design of antibody specificity: From experiments to models and back. - Jorge Fernandez-de-Cossío-Diaz; Guido Uguzzoni; Kévin Ricard; Francesca Anselmi; Clément Nizak; Andrea Pagnani; Olivier Rivoire (PLoS Comput. Biol., 2024)

Inference of annealed protein fitness landscapes with AnnealDCA. - Luca Sesta; Andrea Pagnani; Jorge Fernandez-de-Cossío-Diaz; Guido Uguzzoni (PLoS Comput. Biol., 2024)

Unsupervised modeling of mutational landscapes of adeno-associated viruses viability. - Matteo De Leonardis; Jorge Fernandez-de-Cossío-Diaz; Guido Uguzzoni; Andrea Pagnani (BMC Bioinform., 2024)