Ant colony pattern search algorithms for unconstrained and bound constrained optimization. - Yuanjing Feng; Li Yu 001; Gui-Jun Zhang (Appl. Math. Comput., 2007)

Delay-dependent H∞ Control for Uncertain 2-D Discrete Systems with State Delay in the Roesser Model. - Jianming Xu; Yurong Nan; Guijun Zhang; Linlin Ou; Hongjie Ni (Circuits Syst. Signal Process., 2013)

Measurement and evaluation of Chinese regional energy efficiency based on provincial panel data. - Gaofeng Zou; Longmei Chen; Wei Liu; Xiaoxin Hong; Guijun Zhang; Ziyi Zhang (Math. Comput. Model., 2013)

基于Monte Carlo局部增强的多模态优化算法 (Local Monte Carlo Search Approach to Multimodal Problem in Protein Conformation Space Optimization). - Xianpao Chen; Guijun Zhang; Chuanqing Qin; Xiaohu Hao (计算机科学, 2015)

蛋白质构象空间局部增强差分进化搜索方法 (Local Enhancement Differential Evolution Searching Method for Protein Conformational Space). - Hui Dong; Xiaohu Hao; Guijun Zhang (计算机科学, 2015)

一种基于片段组装的蛋白质构象空间优化算法 (Protein Conformational Space Optimization Algorithm Based on Fragment-assembly). - Xiaohu Hao; Guijun Zhang; Xiaogen Zhou; Zhenghua Cheng; Qipeng Zhang (计算机科学, 2015)

一种动态自适应差分进化算法 (Dynamic Adaptive Differential Evolution Algorithm). - Zhangwei Li; Xiaogen Zhou; Guijun Zhang (计算机科学, 2015)

多模式公交组合调度优化模型 (Combinatorial Optimization Model of Multi-modal Transit Scheduling). - Jie Ming; Guijun Zhang; Yudong Liu (计算机科学, 2015)

Differential evolution with multi-stage strategies for global optimization. - Xiaogen Zhou; Gui-Jun Zhang; Xiao-hu Hao; Li Yu 001; Dongwei Xu (CEC, 2016)

Enhanced differential evolution using local Lipschitz underestimate strategy for computationally expensive optimization problems. - Xiaogen Zhou; Gui-jun Zhang; Xiao-hu Hao; Dongwei Xu; Li Yu 001 (Appl. Soft Comput., 2016)

A novel differential evolution algorithm using local abstract convex underestimate strategy for global optimization. - Xiaogen Zhou; Gui-jun Zhang; Xiao-hu Hao; Li Yu 001 (Comput. Oper. Res., 2016)

一种配电网络差分禁忌线路规划方法 (Hybrid Differential Evolution Based on Tabu Search Algorithm for Distribution Network Line Planning). - Guijun Zhang; Huadong Xia; Xiaogen Zhou; Beijin Zhang (计算机科学, 2016)

A Novel Method Using Abstract Convex Underestimation in Ab-Initio Protein Structure Prediction for Guiding Search in Conformational Feature Space. - Xiao-hu Hao; Gui-jun Zhang; Xiaogen Zhou; Xufeng Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

基于副本交换的局部增强差分进化蛋白质结构从头预测方法 (Replica Exchange Based Local Enhanced Differential Evolution Searching Method in Ab-initio Protein Structure Prediction). - Zhangwei Li; Xiaohu Hao; Guijun Zhang (计算机科学, 2017)

Enhancing Protein Conformational Space Sampling Using Distance Profile-Guided Differential Evolution. - Gui-Jun Zhang; Xiaogen Zhou; Xufeng Yu; Xiao-hu Hao; Li Yu 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Abstract Convex Underestimation Assisted Multistage Differential Evolution. - Xiaogen Zhou; Gui-Jun Zhang (IEEE Trans. Cybern., 2017)

Guiding exploration in conformational feature space with Lipschitz underestimation for ab-initio protein structure prediction. - Xiao-hu Hao; Gui-jun Zhang; Xiaogen Zhou (Comput. Biol. Chem., 2018)

柔性车间生产排产调度优化方法 (Optimization Method of Production Scheduling in Flexible Job). - Guijun Zhang; Qing Ding; Liujing Wang; Xiaogen Zhou (计算机科学, 2018)

基于动态策略的差分进化柔性车间优化调度 (Dynamic Strategy-based Differential Evolution for Flexible Job Shop Scheduling Optimization). - Guijun Zhang; Wen Wang; Xiaogen Zhou; Liujing Wang (计算机科学, 2018)

Mutually unbiased special entangled bases with Schmidt number 2 in ({ mathbb {C}}^3 otimes { mathbb {C}}^{4k} ). - Yi-Fan Han; Gui-Jun Zhang; Xin-Lei Yong; Lingshan Xu; Yuan-Hong Tao (Quantum Inf. Process., 2018)

Unextendible maximally entangled bases in ({ mathbb {C}}^{pd} otimes { mathbb {C}}^{qd} ). - Gui-Jun Zhang; Yuan-Hong Tao; Yi-Fan Han; Xin-Lei Yong; Shao-Ming Fei (Quantum Inf. Process., 2018)

Multi-subpopulation Algorithm with Ensemble Mutation Strategies for Protein Structure Prediction. - Chunxiang Peng; Xiaogen Zhou; Guijun Zhang (BIC-TA (1), 2019)

蛋白质结构从头预测多级个体筛选进化算法 (Multi-layer Screening Based Evolution Algorithm for De Novo Protein Structure Prediction). - Zhangwei Li; Xiaohu Hao; Guijun Zhang (计算机科学, 2019)

Research on exchange rate forecasting based on deep belief network. - Jing Zheng; Xiao Fu; Guijun Zhang (Neural Comput. Appl., 2019)

Analysis of Hospitalizing Behaviors Based on Big Trajectory Data. - Yongdong Wang; Dongwei Xu; Peng Peng; Qi Xuan 001; Gui-jun Zhang (IEEE Trans. Comput. Soc. Syst., 2019)

Differential Evolution With Underestimation-Based Multimutation Strategy. - Xiaogen Zhou; Gui-Jun Zhang (IEEE Trans. Cybern., 2019)

CGLFold: a contact-assisted de novo protein structure prediction using global exploration and loop perturbation sampling algorithm. - Jun Liu 078; Xiao-Gen Zhou; Yang Zhang 040; Gui-Jun Zhang (Bioinform., 2020)

scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures. - Yan Zhang; Yaru Zhang; Jun Hu 010; Ji Zhang; Fangjie Guo; Meng Zhou 003; Guijun Zhang; Fulong Yu; Jianzhong Su (Bioinform., 2020)

Automatic generation of Chinese abstract based on vocabulary and LSTM neural network. - Guijun Zhang (Int. J. Wirel. Mob. Comput., 2020)

基于接触图残基对距离约束的蛋白质结构预测算法 (Contact Map-based Residue-pair Distances Restrained Protein Structure Prediction Algorithm). - Tengyu Xie; Xiaogen Zhou; Jun Hu 010; Guijun Zhang (计算机科学, 2020)

TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based Multi-View Feature Learning. - Jun Hu 010; Xiaogen Zhou; Yi-Heng Zhu 001; Dong-Jun Yu; Gui-Jun Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Secondary Structure and Contact Guided Differential Evolution for Protein Structure Prediction. - Gui-Jun Zhang; Lai-Fa Ma; Xiao-Qi Wang; Xiaogen Zhou (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Two-Stage Distance Feature-based Optimization Algorithm for De novo Protein Structure Prediction. - Gui-Jun Zhang; Xiao-Qi Wang; Lai-Fa Ma; Liu-Jing Wang; Jun Hu 010; Xiao-Gen Zhou (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Underestimation-Assisted Global-Local Cooperative Differential Evolution and the Application to Protein Structure Prediction. - Xiaogen Zhou; Chunxiang Peng; Jun Liu 078; Yang Zhang 040; Gui-Jun Zhang (IEEE Trans. Evol. Comput., 2020)

Adaptive Differential Evolution With Information Entropy-Based Mutation Strategy. - Liujing Wang; Xiaogen Zhou; Tengyu Xie; Jun Liu 078; Guijun Zhang (IEEE Access, 2021)

Distance-guided protein folding based on generalized descent direction. - Liujing Wang; Jun Liu 078; Yuhao Xia; Jiakang Xu; Xiaogen Zhou; Guijun Zhang (Briefings Bioinform., 2021)

A de novo protein structure prediction by iterative partition sampling, topology adjustment and residue-level distance deviation optimization. - Jun Liu 078; Kai-Long Zhao; Guang-Xing He; Liu-Jing Wang; Xiao-Gen Zhou; Gui-Jun Zhang (Bioinform., 2021)

A sequential niche multimodal conformational sampling algorithm for protein structure prediction. - Yuhao Xia; Chunxiang Peng; Xiao-Gen Zhou; Gui-Jun Zhang (Bioinform., 2021)

MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction. - Kai-Long Zhao; Jun Liu 078; Xiao-Gen Zhou; Jianzhong Su; Yang Zhang 040; Gui-Jun Zhang (Bioinform., 2021)

Improving Land Use Planning through the Evaluation of Ecosystem Services: One Case Study of Quyang County. - Lin Liu; Yapeng Zhou; Haikui Yin; Ruiqiang Zhang; Ying Ma; Guijun Zhang; Pengfei Zhao; Jinxiong Feng (Complex., 2021)

A More Efficient Chinese Named Entity Recognition base on BERT and Syntactic Analysis. - Xiao Fu; Guijun Zhang (CoRR, 2021)

TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features. - Jun Hu 010; Liang Rao; Yi-Heng Zhu 001; Gui-Jun Zhang; Dong-Jun Yu (J. Chem. Inf. Model., 2021)

Learning to capture dependencies between global features of different convolution layers. - Zhangwei Li; Anshun Hu; Xiaofei Wang; Jun Hu 010; Guijun Zhang (J. Vis. Commun. Image Represent., 2021)

Protein Structure Prediction Using Population-Based Algorithm Guided by Information Entropy. - Gui-Jun Zhang; Tengyu Xie; Xiao-Gen Zhou; Liu-Jing Wang; Jun Hu 010 (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Construct a variable-length fragment library for de novo protein structure prediction. - Qiongqiong Feng; Minghua Hou; Jun Liu 078; Kai-Long Zhao; Guijun Zhang (Briefings Bioinform., 2022)

Multi contact-based folding method for de novo protein structure prediction. - Minghua Hou; Chunxiang Peng; Xiaogen Zhou; Biao Zhang; Guijun Zhang (Briefings Bioinform., 2022)

Accurate flexible refinement for atomic-level protein structure using cryo-EM density maps and deep learning. - Biao Zhang; Dong Liu; Yang Zhang 040; Hong-Bin Shen; Gui-Jun Zhang (Briefings Bioinform., 2022)

DeepUMQA: ultrafast shape recognition-based protein model quality assessment using deep learning. - Sai-Sai Guo; Jun Liu 078; Xiao-Gen Zhou; Gui-Jun Zhang (Bioinform., 2022)

Structural analogue-based protein structure domain assembly assisted by deep learning. - Chunxiang Peng; Xiao-Gen Zhou; Yuhao Xia; Jun Liu 078; Minghua Hou; Gui-Jun Zhang (Bioinform., 2022)

ATPdock: a template-based method for ATP-specific protein-ligand docking. - Liang Rao; Ning-Xin Jia; Jun Hu 010; Dong-Jun Yu; Gui-Jun Zhang (Bioinform., 2022)

A Noise-Robust Loss for Unlabeled Entity Problem in Named Entity Recognition. - Wentao Kang; Guijun Zhang; Xiao Fu (CoRR, 2022)

DEMO2: Assemble multi-domain protein structures by coupling analogous template alignments with deep-learning inter-domain restraint prediction. - Xiaogen Zhou; Chunxiang Peng; Wei Zheng 013; Yang Li 107; Guijun Zhang; Yang Zhang 040 (Nucleic Acids Res., 2022)

Progressive assembly of multi-domain protein structures from cryo-EM density maps. - Xiaogen Zhou; Yang Li 107; Chengxin Zhang; Wei Zheng 013; Guijun Zhang; Yang Zhang 040 (Nat. Comput. Sci., 2022)

Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-Based Cube-Format Feature. - Jun Hu 010; Yan-Song Bai; Lin-Lin Zheng; Ning-Xin Jia; Dong-Jun Yu; Gui-Jun Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

De novo Protein Structure Prediction by Coupling Contact With Distance Profile. - Chunxiang Peng; Xiao-Gen Zhou; Gui-Jun Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Pathfinder: Protein folding pathway prediction based on conformational sampling. - Zhaohong Huang; Xinyue Cui; Yuhao Xia; Kailong Zhao; Guijun Zhang (PLoS Comput. Biol., 2023)

DomBpred: Protein Domain Boundary Prediction Based on Domain-Residue Clustering Using Inter-Residue Distance. - Zhong-Ze Yu; Chunxiang Peng; Jun Liu 078; Biao Zhang; Xiao-Gen Zhou; Gui-Jun Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Improved model quality assessment using sequence and structural information by enhanced deep neural networks. - Jun Liu 078; Kai-Long Zhao; Guijun Zhang (Briefings Bioinform., 2023)

Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order Feature Extraction and a Deep Neural Network Algorithm. - Jun Hu 010; Wenwu Zeng; Ning-Xin Jia; Muhammad Arif 012; Dong-Jun Yu; Gui-Jun Zhang (J. Chem. Inf. Model., 2023)

Inter-domain distance prediction based on deep learning for domain assembly. - Fengqi Ge; Chunxiang Peng; Xinyue Cui; Yuhao Xia; Guijun Zhang (Briefings Bioinform., 2023)

GraphGPSM: a global scoring model for protein structure using graph neural networks. - Guang-Xing He; Jun Liu 078; Dong Liu; Guijun Zhang (Briefings Bioinform., 2023)

Improving DNA 6mA Site Prediction via Integrating Bidirectional Long Short-Term Memory, Convolutional Neural Network, and Self-Attention Mechanism. - Jun Hu 010; Yu-Xuan Tang; Yu Zhou; Zhe Li; Bing Rao; Gui-Jun Zhang (J. Chem. Inf. Model., 2023)

DeepUMQA3: a web server for accurate assessment of interface residue accuracy in protein complexes. - Jun Liu 078; Dong Liu; Gui-Jun Zhang (Bioinform., 2023)

E2EDA: Protein Domain Assembly Based on End-to-End Deep Learning. - Hai-Tao Zhu; Yuhao Xia; Gui-Jun Zhang (J. Chem. Inf. Model., 2023)

Assessing protein model quality based on deep graph coupled networks using protein language model. - Dong Liu; Biao Zhang; Jun Liu 078; Hui Li; Le Song; Guijun Zhang (Briefings Bioinform., 2023)

Mutually unbiased maximally entangled bases in Cdøtimes Cd with d an odd prime power. - Lai-Zhen Luo; Yu Xia; Gui-Jun Zhang (Quantum Inf. Process., 2023)

SPDesign: protein sequence designer based on structural sequence profile using ultrafast shape recognition. - Hui Wang; Dong Liu; Kailong Zhao; Yajun Wang; Guijun Zhang (Briefings Bioinform., 2024)

DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting. - Ziying Zhang; Yaxian Cai; Biao Zhang; Wei Zheng 013; Peter L. Freddolino; Guijun Zhang; Xiaogen Zhou (Briefings Bioinform., 2024)

Prediction of Inter-Residue Multiple Distances and Exploration of Protein Multiple Conformations by Deep Learning. - Fujin Zhang; Zhangwei Li; Kailong Zhao; Pengxin Zhao; Guijun Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

Recent Advances and Challenges in Protein Structure Prediction. - Chunxiang Peng; Fang Liang; Yuhao Xia; Kai-Long Zhao; Minghua Hou; Gui-Jun Zhang (J. Chem. Inf. Model., 2024)

Beyond static structures: protein dynamic conformations modeling in the post-AlphaFold era. - Xinyue Cui; Lingyu Ge; Xia Chen; Zexin Lv; Suhui Wang; Xiaogen Zhou; Guijun Zhang (Briefings Bioinform., 2025)

Fitting Atomic Structures into Cryo-EM Maps by Coupling Deep Learning-Enhanced Map Processing with Global-Local Optimization. - Yaxian Cai; Ziying Zhang; Xiangyu Xu; Liang Xu; Yu Chen; Guijun Zhang; Xiaogen Zhou (J. Chem. Inf. Model., 2025)

M-DeepAssembly: enhanced DeepAssembly based on multi-objective multi-domain protein conformation sampling. - Xinyue Cui; Yuhao Xia; Minghua Hou; Xuanfeng Zhao; Suhui Wang; Guijun Zhang (BMC Bioinform., 2025)

Knowledge discovery from database: MRI radiomic features to assess recurrence risk in high-grade meningiomas. - Chen Chen; Lifang Hao; Bin Bai; Guijun Zhang (BMC Medical Imaging, 2025)