SchistoDB: a Schistosoma mansoni genome resource. - Adhemar Zerlotini; Mark Heiges; Haiming Wang; Romulo L. V. Moraes; Anderson J. Dominitini; Jerônimo C. Ruiz; Jessica C. Kissinger; Guilherme Oliveira 001 (Nucleic Acids Res., 2009)

SchistoDB: an updated genome resource for the three key schistosomes of humans. - Adhemar Zerlotini; Eric R. G. R. Aguiar; Fudong Yu; Huayong Xu; Yixue Li; Neil D. Young; Robin B. Gasser; Anna V. Protasio; Matthew Berriman; David S. Roos; Jessica C. Kissinger; Guilherme Oliveira 001 (Nucleic Acids Res., 2013)

Assessing the efficiency of multiple sequence alignment programs. - Fabiano Sviatopolk-Mirsky Pais; Patrícia de Ruy; Guilherme Oliveira 001; Roney Coimbra (Algorithms Mol. Biol., 2014)

Taxonomic and functional diversity of microbial community from a mining environment. - Julliane D. Medeiros; Laura R. Leite; Sara Cuadros-Orellana; Guilherme Oliveira 001 (BMC Bioinform., 2015)

Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage. - Jean P. Zukurov; Sieberth do Nascimento-Brito; Angela C. Volpini; Guilherme C. Oliveira 001; Luiz Mario R. Janini; Fernando Antoneli (Algorithms Mol. Biol., 2016)

Hybrid agent-based model for quantitative in-silico cell-free protein synthesis. - Anton Semenchenko; Guilherme Oliveira 001; Allbens Picardi Faria Atman (Biosyst., 2016)

Metagenomics-based signature clustering and interactive visualization analysis. - Vitor Cirilo Araujo Santos; Leandro Corrêa; Bianchi Serique Meiguins; Guilherme Oliveira 001; Ronnie Alves (IJCNN, 2018)

PIPEBAR and OverlapPER: tools for a fast and accurate DNA barcoding analysis and paired-end assembly. - Renato R. M. Oliveira; Gisele Lopes Nunes; Talvâne Glauber Lopes de Lima; Guilherme Oliveira 001; Ronnie Alves (BMC Bioinform., 2018)

Machine learning meets genome assembly. - Kleber Padovani de Souza; João Carlos Setubal; André Carlos Ponce de Leon Ferreira de Carvalho; Guilherme Oliveira 001; Annie Chateau; Ronnie Alves (Briefings Bioinform., 2019)

PIMBA: A PIpeline for MetaBarcoding Analysis. - Renato R. M. Oliveira; Raíssa Silva; Gisele Lopes Nunes; Guilherme Oliveira 001 (BSB, 2021)

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. - Matthew R. Dillon; Evan Bolyen; Anja Adamov; Aeriel Belk; Emily Borsom; Zachary Burcham; Justine W. Debelius; Heather Deel; Alex Emmons; Mehrbod Estaki; Chloe Herman; Christopher R. Keefe; et al. (PLoS Comput. Biol., 2021)

Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries. - Benjamin L. Moore; Patricia Carvajal López; Paballo Abel Chauke; Marco Cristancho; Victoria Dominguez Del Angel; Selene L. Fernandez-Valverde; Amel Ghouila; Piraveen Gopalasingam; Fatma Zahra Guerfali; Alice Matimba; Sarah L. Morgan; Guilherme Oliveira 001; et al. (PLoS Comput. Biol., 2021)

SPLACE: A tool to automatically SPLit, Align, and ConcatenatE genes for phylogenomic inference of several organisms. - Renato R. M. Oliveira; Santelmo Vasconcelos; Guilherme Oliveira 001 (Frontiers Bioinform., 2022)

Correction: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries. - Benjamin L. Moore; Patricia Carvajal López; Paballo Abel Chauke; Marco Cristancho; Victoria Dominguez Del Angel; Selene L. Fernandez-Valverde; Amel Ghouila; Piraveen Gopalasingam; Fatma Zahra Guerfali; Alice Matimba; Sarah L. Morgan; Guilherme Oliveira 001; et al. (PLoS Comput. Biol., 2022)