Parallel and Memory-Efficient Reads Indexing for Genome Assembly. - Guillaume Chapuis; Rayan Chikhi; Dominique Lavenier (PPAM (2), 2011)

Parallel Seed-Based Approach to Protein Structure Similarity Detection. - Guillaume Chapuis; Mathilde Le Boudic-Jamin; Rumen Andonov; Hristo N. Djidjev; Dominique Lavenier (PPAM (2), 2013)

Graphics Processing Unit-Accelerated Quantitative Trait Loci Detection. - Guillaume Chapuis; Olivier Filangi; Jean-Michel Elsen; Dominique Lavenier; Pascale Le Roy (J. Comput. Biol., 2013)

Exploiting parallel features of modern computer architectures in bioinformatics : applications to genetics, structure comparison and large graph analysis. (Exploiter les capacités de calcul parallèle des architectures modernes en bioinformatique). - Guillaume Chapuis (2013)

Efficient Multi-GPU Computation of All-Pairs Shortest Paths. - Hristo N. Djidjev; Sunil Thulasidasan; Guillaume Chapuis; Rumen Andonov; Dominique Lavenier (IPDPS, 2014)

Shortest-Path Queries in Planar Graphs on GPU-Accelerated Architectures. - Guillaume Chapuis; Hristo N. Djidjev (LSSC, 2015)

Simian integrated framework for parallel discrete event simulation on GPUs. - Guillaume Chapuis; Stephan J. Eidenbenz; Nandakishore Santhi; Eunjung Park (WSC, 2015)

Parameterized benchmarking of parallel discrete event simulation systems: communication, computation, and memory. - Eunjung Park; Stephan J. Eidenbenz; Nandakishore Santhi; Guillaume Chapuis; Bradley W. Settlemyer (WSC, 2015)

All-Pairs Shortest Path algorithms for planar graph for GPU-accelerated clusters. - Hristo N. Djidjev; Guillaume Chapuis; Rumen Andonov; Sunil Thulasidasan; Dominique Lavenier (J. Parallel Distributed Comput., 2015)

Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection. - Guillaume Chapuis; Mathilde Le Boudic-Jamin; Rumen Andonov; Hristo N. Djidjev; Dominique Lavenier (Sci. Program., 2015)

Parallel Shortest-Path Queries in Planar Graphs. - Lyudmil Aleksandrov; Guillaume Chapuis; Hristo N. Djidjev (HPGP@HPDC, 2016)

An Integrated Interconnection Network Model for Large-Scale Performance Prediction. - Kishwar Ahmed; Mohammad Obaida; Jason Liu 001; Stephan J. Eidenbenz; Nandakishore Santhi; Guillaume Chapuis (SIGSIM-PADS, 2016)

Predicting performance of Smoothed Particle Hydrodynamics codes at large scales. - Guillaume Chapuis; David Nicholaeff; Stephan J. Eidenbenz; Robert S. Pavel (WSC, 2016)

GPU Performance Prediction Through Parallel Discrete Event Simulation and Common Sense. - Guillaume Chapuis; Stephan J. Eidenbenz; Nandakishore Santhi (EAI Endorsed Trans. Ubiquitous Environ., 2016)

Finding Maximum Cliques on a Quantum Annealer. - Guillaume Chapuis; Hristo N. Djidjev; Georg Hahn; Guillaume Rizk (Conf. Computing Frontiers, 2017)

Finding Maximum Cliques on the D-Wave Quantum Annealer. - Guillaume Chapuis; Hristo N. Djidjev; Georg Hahn; Guillaume Rizk (J. Signal Process. Syst., 2019)