Recent Advances in Solving the Protein Threading Problem. - Rumen Andonov; Guillaume Collet; Jean-François Gibrat; Antoine Marin; Vincent Poirriez; Nicola Yanev (Grid Computing for Bioinformatics and Computational Biology, 2007)

Recent Advances in Solving the Protein Threading Problem - Rumen Andonov; Guillaume Collet; Jean-François Gibrat; Antoine Marin; Vincent Poirriez; Nicola Yanev (CoRR, 2007)

Protein Threading. - Guillaume Collet; Rumen Andonov; Nicola Yanev; Jean-François Gibrat (CTW, 2009)

Alignements locaux pour la reconnaissance de repliements des protéines par programmation linéaire en nombres entiers. (Protein Fold Recognition by Mixed Integer Programming). - Guillaume Collet (2010)

Local protein threading by Mixed Integer Programming. - Guillaume Collet; Rumen Andonov; Nicola Yanev; Jean-François Gibrat (Discret. Appl. Math., 2011)

Extending the Metabolic Network of Ectocarpus Siliculosus Using Answer Set Programming. - Guillaume Collet; Damien Eveillard; Martin Gebser; Sylvain Prigent 001; Torsten Schaub; Anne Siegel; Sven Thiele (LPNMR, 2013)

Commet: Comparing and combining multiple metagenomic datasets. - Nicolas Maillet; Guillaume Collet; Thomas Vannier; Dominique Lavenier; Pierre Peterlongo (BIBM, 2014)

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. - Sylvain Prigent 001; Clémence Frioux; Simon M. Dittami; Sven Thiele; Abdelhalim Larhlimi; Guillaume Collet; Fabien Gutknecht; Jeanne Got; Damien Eveillard; Jérémie Bourdon; Frédéric Plewniak; Thierry Tonon; et al. (PLoS Comput. Biol., 2017)

Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints. - Marine Louarn; Guillaume Collet; Ève Barré; Thierry Fest; Olivier Dameron; Anne Siegel; Fabrice Chatonnet (PLoS Comput. Biol., 2024)