Beyond Representing Orthology Relations by Trees. - Katharina T. Huber; Guillaume E. Scholz (Algorithmica, 2018)

New algorithms and mathematical tools for phylogenetics beyond trees. - Guillaume E. Scholz (2018)

Three-Way Symbolic Tree-Maps and Ultrametrics. - Katharina T. Huber; Vincent Moulton; Guillaume E. Scholz (J. Classif., 2019)

Phylogenetic networks that are their own fold-ups. - Katharina T. Huber; Guillaume E. Scholz (Adv. Appl. Math., 2020)

Rapid screening and detection of inter-type viral recombinants using phylo-k-mers. - Guillaume E. Scholz; Benjamin Linard; Nikolai Romashchenko; Eric Rivals; Fabio Pardi (Bioinform., 2021)

Pseudo-Cographs, Polar-Cats and Level-1 Network Explainable Graphs. - Marc Hellmuth; Guillaume E. Scholz (CoRR, 2021)

From modular decomposition trees to level-1 networks: Pseudo-cographs, polar-cats and prime polar-cats. - Marc Hellmuth; Guillaume E. Scholz (Discret. Appl. Math., 2022)

Overlaid species forests. - Katharina T. Huber; Vincent Moulton; Guillaume E. Scholz (Discret. Appl. Math., 2022)

Linear Time Algorithms for NP-Hard Problems Restricted to GaTEx Graphs. - Marc Hellmuth; Guillaume E. Scholz (COCOON (1), 2023)

Injective Split Systems. - Marc Hellmuth; Katharina T. Huber; Vincent Moulton; Guillaume E. Scholz; Peter F. Stadler (Graphs Comb., 2023)

RNA interaction format: a general data format for RNA interactions. - Richard A. Schäfer; Dominik Rabsch; Guillaume E. Scholz; Peter F. Stadler; Wolfgang R. Hess; Rolf Backofen; Jörg Fallmann; Björn Voß (Bioinform., 2023)

Compatible Split Systems on a Multiset. - Vincent Moulton; Guillaume E. Scholz (Electron. J. Comb., 2024)

Network Representation and Modular Decomposition of Combinatorial Structures: A Galled-Tree Perspective. - Anna Lindeberg; Guillaume E. Scholz; Marc Hellmuth (CoRR, 2024)

Shared Ancestry Graphs and Symbolic Arboreal Maps. - Katharina T. Huber; Vincent Moulton; Guillaume E. Scholz (SIAM J. Discret. Math., 2024)

Resolving prime modules: The structure of pseudo-cographs and galled-tree explainable graphs. - Marc Hellmuth; Guillaume E. Scholz (Discret. Appl. Math., 2024)

Core Potentials: The Consensus Segmentation Conjecture. - Anahy Santiago Arguello; Guillaume E. Scholz; Peter F. Stadler (Math. Comput. Sci., 2024)

A Sankoff-Rousseau-Like Algorithm for Minimizing Lateral Gene Transfers and Losses on Single Origin Characters. - Alitzel López Sánchez; Guillaume E. Scholz; Peter F. Stadler; Manuel Lafond (RECOMB-CG, 2025)

The complement of the Djoković-Winkler relation. - Marc Hellmuth; Bruno J. Schmidt; Guillaume E. Scholz; Sandhya Thekkumpadan Puthiyaveedu (Discret. Math., 2025)

Is this network proper forest-based? - Katharina T. Huber; Leo van Iersel; Vincent Moulton; Guillaume E. Scholz (Inf. Process. Lett., 2025)

Solving NP-hard problems on GaTEx graphs: Linear-time algorithms for perfect orderings, cliques, colorings, and independent sets. - Marc Hellmuth; Guillaume E. Scholz (Theor. Comput. Sci., 2025)

Orthology and Near-Cographs in the Context of Phylogenetic Networks. - Anna Lindeberg; Guillaume E. Scholz; Nicolas Wieseke; Marc Hellmuth (CoRR, 2025)