Starcode: sequence clustering based on all-pairs search. - Eduard Zorita; Pol Cuscó; Guillaume J. Filion (Bioinform., 2015)

Zerone: a ChIP-seq discretizer for multiple replicates with built-in quality control. - Pol Cuscó; Guillaume J. Filion (Bioinform., 2016)

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors. - François Serra; Davide Baù; Mike Goodstadt; David Castillo; Guillaume J. Filion; Marc A. Martí-Renom (PLoS Comput. Biol., 2017)

Analytic Combinatorics for Computing Seeding Probabilities. - Guillaume J. Filion (Algorithms, 2018)

Correction: Filion, G.J. Analytic Combinatorics for Computing Seeding Probabilities. Algorithms 2018, 11, 3. - Guillaume J. Filion (Algorithms, 2022)