Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource. - Thomas J. Sharpton; Guillaume Jospin; Dongying Wu; Morgan G. I. Langille; Katherine S. Pollard; Jonathan A. Eisen (BMC Bioinform., 2012)

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. - David Coil; Guillaume Jospin; Aaron E. Darling (Bioinform., 2015)