An Automated Benchmarking Toolset. - Michel Courson; Alan Mink; Guillaume Marçais; Benjamin Traverse (HPCN Europe, 2000)

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. - Guillaume Marçais; Carl Kingsford (Bioinform., 2011)

Genome Assembly Techniques. - Guillaume Marçais (2011)

Parsimonious reconstruction of network evolution. - Rob Patro; Emre Sefer; Justin Malin; Guillaume Marçais; Saket Navlakha; Carl Kingsford (Algorithms Mol. Biol., 2012)

The MaSuRCA genome assembler. - Aleksey V. Zimin; Guillaume Marçais; Daniela Puiu; Michael Roberts; Steven L. Salzberg; James A. Yorke (Bioinform., 2013)

Compact Universal k-mer Hitting Sets. - Yaron Orenstein; David Pellow; Guillaume Marçais; Ron Shamir; Carl Kingsford (WABI, 2016)

Improving the performance of minimizers and winnowing schemes. - Guillaume Marçais; David Pellow; Daniel Bork; Yaron Orenstein; Ron Shamir; Carl Kingsford (Bioinform., 2017)

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing. - Yaron Orenstein; David Pellow; Guillaume Marçais; Ron Shamir; Carl Kingsford (PLoS Comput. Biol., 2017)

Asymptotically optimal minimizers schemes. - Guillaume Marçais; Dan F. DeBlasio; Carl Kingsford (Bioinform., 2018)

MUMmer4: A fast and versatile genome alignment system. - Guillaume Marçais; Arthur L. Delcher; Adam M. Phillippy; Rachel Coston; Steven L. Salzberg; Aleksey V. Zimin (PLoS Comput. Biol., 2018)

Practical Universal k-mer Sets for Minimizer Schemes. - Dan F. DeBlasio; Fiyinfoluwa Gbosibo; Carl Kingsford; Guillaume Marçais (BCB, 2019)

Locality-sensitive hashing for the edit distance. - Guillaume Marçais; Dan F. DeBlasio; Prashant Pandey 001; Carl Kingsford (Bioinform., 2019)

Improved design and analysis of practical minimizers. - Hongyu Zheng 001; Carl Kingsford; Guillaume Marçais (Bioinform., 2020)

Sequence-specific minimizers via polar sets. - Hongyu Zheng 001; Carl Kingsford; Guillaume Marçais (Bioinform., 2021)

Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data. - Trevor S. Frisby; Shawn J. Baker; Guillaume Marçais; Quang Minh Hoang; Carl Kingsford; Christopher J. Langmead (BMC Bioinform., 2021)

Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length. - Hongyu Zheng 001; Carl Kingsford; Guillaume Marçais (J. Comput. Biol., 2021)

Creating and Using Minimizer Sketches in Computational Genomics. - Hongyu Zheng 001; Guillaume Marçais; Carl Kingsford (J. Comput. Biol., 2023)

Sketching Methods with Small Window Guarantee Using Minimum Decycling Sets. - Guillaume Marçais; Dan F. DeBlasio; Carl Kingsford (J. Comput. Biol., 2024)

Density and Conservation Optimization of the Generalized Masked-Minimizer Sketching Scheme. - Minh Hoang; Guillaume Marçais; Carl Kingsford (J. Comput. Biol., 2024)

A synthesis for uniformly 3-edge-connected graphs. - Carl Kingsford; Guillaume Marçais (Discret. Appl. Math., 2025)