Genetdes: automatic design of transcriptional networks. - Guillermo Rodrigo; Javier Carrera; Alfonso Jaramillo (Bioinform., 2007)

Computational design of proteins with new functions. - Alfonso Jaramillo; Pablo Tortosa; Guillermo Rodrigo; María Suárez; Javier Carrera (BMC Syst. Biol., 2007)

ECOLITASTER: cellular biosensor. - Guillermo Rodrigo; Javier Carrera; Alfonso Jaramillo (BMC Syst. Biol., 2007)

DESHARKY: automatic design of metabolic pathways for optimal cell growth. - Guillermo Rodrigo; Javier Carrera; Kristala Jones Prather; Alfonso Jaramillo (Bioinform., 2008)

Robust dynamical pattern formation from a multifunctional minimal genetic circuit. - Guillermo Rodrigo; Javier Carrera; Santiago F. Elena; Alfonso Jaramillo (BMC Syst. Biol., 2010)

Full Design Automation of Multi-State RNA Devices to Program Gene Expression Using Energy-Based Optimization. - Guillermo Rodrigo; Thomas E. Landrain; Eszter Majer; José-Antonio Daròs; Alfonso Jaramillo (PLoS Comput. Biol., 2013)

RiboMaker: computational design of conformation-based riboregulation. - Guillermo Rodrigo; Alfonso Jaramillo (Bioinform., 2014)

Genetic Redundancies Enhance Information Transfer in Noisy Regulatory Circuits. - Guillermo Rodrigo; Juan F. Poyatos (PLoS Comput. Biol., 2016)

Molecular signatures of silencing suppression degeneracy from a complex RNA virus. - Silvia Ambrós; Neus Gómez-Muñoz; Silvia Giménez-Santamarina; Javier Sánchez-Vicente; Josep Navarro-López; Fernando Martínez; José-Antonio Daròs; Guillermo Rodrigo (PLoS Comput. Biol., 2021)

Gene regulation by a protein translation factor at the single-cell level. - Roswitha Dolcemascolo; Lucas Goiriz; Roser Montagud-Martínez; Guillermo Rodrigo (PLoS Comput. Biol., 2022)