Graph walks for classification of histopathological images. - Gulden Olgun; Cenk Sokmensuer; Cigdem Gunduz Demir (ISBI, 2013)

Local Object Patterns for the Representation and Classification of Colon Tissue Images. - Gulden Olgun; Cenk Sokmensuer; Cigdem Gunduz Demir (IEEE J. Biomed. Health Informatics, 2014)

Discovering regulatory non-coding RNA interactions (Düzenleyici kodlanmayan RNA etkileşimlerinin keşfi) - Gulden Olgun (2019)

Functional Enrichment Analysis of Deregulated Long Non-Coding RNAs in Cancer Based on their Genomic Neighbors. - Gulden Olgun; Öznur Tastan (BCB, 2020)

NoRCE: non-coding RNA sets cis enrichment tool. - Gulden Olgun; Afshan Nabi; Öznur Tastan (BMC Bioinform., 2021)

Correction to: NoRCE: non‑coding RNA sets cis enrichment tool. - Gulden Olgun; Afshan Nabi; Öznur Tastan (BMC Bioinform., 2021)

miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction Tests. - Gulden Olgun; Öznur Tastan (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)