Visualization of Spatial Neuroanatomical Data. - Cyrus Shahabi; Ali E. Dashti; Gully A. P. C. Burns; Shahram Ghandeharizadeh; Ning Jiang; Larry W. Swanson (VISUAL, 1999)

Neuroscholar 1.00, a neuroinformatics databasing website. - Gully Burns (Neurocomputing, 1999)

Towards a federated neuroscientific knowledge management system using brain atlases. - Gully Burns; Klaas E. Stephan; Bertram Ludäscher; Amarnath Gupta; Rolf Kötter (Neurocomputing, 2001)

Software engineering tools and approaches for neuroinformatics: the design and implementation of the View-Primitive Data Model framework (VPDMf). - Gully A. P. C. Burns; Fang Bian; Wei-Cheng Cheng; Shyam Kapadia; Cyrus Shahabi; Shahram Ghandeharizadeh (Neurocomputing, 2002)

Tools and approaches for the construction of knowledge models from the neuroscientific literature. - Gully A. P. C. Burns; Arshad M. Khan; Shahram Ghandeharizadeh; Mark A. O'Neill; Yi-Shin Chen (Neuroinformatics, 2003)

The NeuARt II system: a viewing tool for neuroanatomical data based on published neuroanatomical atlases. - Gully A. P. C. Burns; Wei-Cheng Cheng; Richard H. Thompson; Larry W. Swanson (BMC Bioinform., 2006)

NeuroScholar's electronic laboratory notebook and its application to neuroendocrinology. - Arshad M. Khan; Joel D. Hahn; Wei-Cheng Cheng; Alan G. Watts; Gully A. P. C. Burns (Neuroinformatics, 2006)

Infrastructure for Annotation-Driven Information Extraction from the Primary Scientific Literature: Principles and Practice. - Gully Burns; Donghui Feng 001; Tommy Ingulfsen; Eduard H. Hovy (IEEE SCW, 2007)

Extracting Data Records from Unstructured Biomedical Full Text. - Donghui Feng 001; Gully Burns; Eduard H. Hovy (EMNLP-CoNLL, 2007)

Adaptive Information Extraction for Complex Biomedical Tasks. - Donghui Feng 001; Gully Burns; Eduard H. Hovy (BioNLP, 2008)

Towards Automated Semantic Analysis on Biomedical Research Articles. - Donghui Feng 001; Gully Burns; Jingbo Zhu; Eduard H. Hovy (IJCNLP, 2008)

Intelligent Approaches to Mining the Primary Research Literature: Techniques, Systems, and Examples. - Gully Burns; Donghui Feng 001; Eduard H. Hovy (Computational Intelligence in Medical Informatics, 2008)

The NIH Visual Browser: An Interactive Visualization of Biomedical Research. - Bruce William Herr II; Edmund M. Talley; Gully A. P. C. Burns; David Newman; Gavin LaRowe (IV, 2009)

Biomedical knowledge engineering tools based on experimental design: a case study based on neuroanatomical tract-tracing experiments. - Gully A. P. C. Burns; Thomas A. Russ (K-CAP, 2009)

The Role of Information Extraction in the Design of a Document Triage Application for Biocuration. - Sandeep Pokkunuri; Cartic Ramakrishnan; Ellen Riloff; Eduard H. Hovy; Gully Burns (BioNLP@ACL, 2011)

Knowledge Engineering Tools for Reasoning with Scientific Observations and Interpretations: a Neural Connectivity Use Case. - Thomas A. Russ; Cartic Ramakrishnan; Eduard H. Hovy; Mihail Bota; Gully A. P. C. Burns (BMC Bioinform., 2011)

Knowledge Synthesis with Maps of Neural Connectivity. - Marcelo Tallis; Richard H. Thompson; Thomas A. Russ; Gully A. P. C. Burns (Frontiers Neuroinformatics, 2011)

Enabling collaborative research using the Biomedical Informatics Research Network (BIRN). - Karl G. Helmer; José Luis Ambite; Joseph Ames; Rachana Ananthakrishnan; Gully Burns; Ann L. Chervenak; Ian T. Foster; Lee Liming; David B. Keator; Fabio Macciardi; Ravi K. Madduri; John-Paul Navarro; et al. (J. Am. Medical Informatics Assoc., 2011)

Preliminary Meta-Analyses of Experimental Design with Examples from HIV Vaccine Protection Studies. - Marcelo Tallis; Drashti Dave; Gully A. P. C. Burns (AAAI Fall Symposium: Discovery Informatics, 2012)

Text mining for the biocuration workflow. - Lynette Hirschman; Gully A. P. C. Burns; Martin Krallinger; Cecilia N. Arighi; K. Bretonnel Cohen; Alfonso Valencia; Cathy H. Wu; Andrew Chatr-aryamontri; Karen G. Dowell; Eva Huala; Anália Lourenço; Robert S. Nash; et al. (Database J. Biol. Databases Curation, 2012)

A 2012 Workshop: Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME 2012). - Yongqun He; Luca Toldo; Gully Burns; Cui Tao; Darrell R. Abernethy (J. Biomed. Semant., 2012)

Towards structured sharing of raw and derived neuroimaging data across existing resources - David B. Keator; Karl G. Helmer; Jason Steffener; Jessica A. Turner; Theo G. M. van Erp; Syam Gadde; Naveen Ashish; Gully A. P. C. Burns; B. Nolan Nichols; Satrajit S. Ghosh (CoRR, 2012)

Layout-aware text extraction from full-text PDF of scientific articles. - Cartic Ramakrishnan; Abhishek Patnia; Eduard H. Hovy; Gully A. P. C. Burns (Source Code Biol. Medicine, 2012)

Finna: A Paragraph Prioritization System for Biocuration in the Neurosciences. - Kyle H. Ambert; Aaron M. Cohen; Gully A. P. C. Burns; Eilis Boudreau; M. Kemal Sönmez (AAAI Fall Symposia, 2013)

Organizing Committee. - Gully A. P. C. Burns; Yolanda Gil; Yan Liu 002; Natalia Villanueva-Rosales (AAAI Fall Symposia, 2013)

Preface. - Gully A. P. C. Burns; Yolanda Gil; Yan Liu 002; Natalia Villanueva-Rosales (AAAI Fall Symposia, 2013)

SKIMMR: machine-aided skim-reading. - Vít Novácek; Gully Burns (IUI Companion, 2013)

Virk: an active learning-based system for bootstrapping knowledge base development in the neurosciences. - Kyle H. Ambert; Aaron M. Cohen; Gully A. P. C. Burns; Eilis Boudreau; M. Kemal Sönmez (Frontiers Neuroinformatics, 2013)

Modeling functional Magnetic Resonance Imaging (fMRI) experimental variables in the Ontology of Experimental Variables and Values (OoEVV). - Gully A. P. C. Burns; Jessica A. Turner (NeuroImage, 2013)

Towards structured sharing of raw and derived neuroimaging data across existing resources. - David B. Keator; Karl G. Helmer; Jason Steffener; Jessica A. Turner; Theo G. M. van Erp; Syam Gadde; Naveen Ashish; Gully A. P. C. Burns; B. Nolan Nichols (NeuroImage, 2013)

Reports on the 2013 AAAI Fall Symposium Series. - Gully Burns; Yolanda Gil; Yan Liu 002; Natalia Villanueva-Rosales; Sebastian Risi; Joel Lehman; Jeff Clune; Christian Lebiere; Paul S. Rosenbloom; Frank van Harmelen; James A. Hendler; Pascal Hitzler; et al. (AI Mag., 2014)

Modeling Concept Dependencies in a Scientific Corpus. - Jonathan Gordon 001; Linhong Zhu; Aram Galstyan; Prem Natarajan; Gully Burns (ACL (1), 2016)

Cycles of Scientific Investigation in Discourse - Machine Reading Methods for the Primary Research Contributions of a Paper. - Gully A. P. C. Burns; Anita de Waard; Pradeep Dasigi; Eduard H. Hovy (ICBO/BioCreative, 2016)

Abstract Meaning Representations as Linked Data. - Gully A. P. C. Burns; Ulf Hermjakob; José Luis Ambite (ISWC (2), 2016)

Automated detection of discourse segment and experimental types from the text of cancer pathway results sections. - Gully A. P. C. Burns; Pradeep Dasigi; Anita de Waard; Eduard H. Hovy (Database J. Biol. Databases Curation, 2016)

The BD2K Training Coordinating Center's Data Science Education Platform. - José Luis Ambite; Lily T. Fierro; Florian Geigl; Jonathan Gordon 001; Gully A. P. C. Burns; Kristina Lerman; Jeana Kamdar; Crystal Stewart; Avnish Bhattrai; Xiaoyu Lei; Sumiko Abe; John D. Van Horn (AMIA, 2017)

Structured Generation of Technical Reading Lists. - Jonathan Gordon 001; Stephen Aguilar; Emily Sheng; Gully Burns (BEA@EMNLP, 2017)

An Investigation into the Pedagogical Features of Documents. - Emily Sheng; Prem Natarajan; Jonathan Gordon 001; Gully Burns (BEA@EMNLP, 2017)

Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration. - Gully A. Burns; Randi Vita; James A. Overton; Ward Fleri; Bjoern Peters (K-CAP Workshops, 2017)

Extracting Evidence Fragments for Distant Supervision of Molecular Interactions. - Gully Burns; Pradeep Dasigi; Eduard H. Hovy (SemSci@ISWC, 2017)

BD2K ERuDIte: the Educational Resource Discovery Index for Data Science. - José Luis Ambite; Lily Fierro; Florian Geigl; Jonathan Gordon 001; Gully A. P. C. Burns; Kristina Lerman; John D. Van Horn (WWW (Companion Volume), 2017)

Experiment Segmentation in Scientific Discourse as Clause-level Structured Prediction using Recurrent Neural Networks. - Pradeep Dasigi; Gully A. P. C. Burns; Eduard H. Hovy; Anita de Waard (CoRR, 2017)

Democratizing data science through data science training. - John Darrell Van Horn; Lily Fierro; Jeana Kamdar; Jonathan Gordon 001; Crystal Stewart; Avnish Bhattrai; Sumiko Abe; Xiaoxiao Lei; Caroline O'Driscoll; Aakanchha Sinha; Priyambada Jain; Gully Burns; et al. (PSB, 2018)

Towards Evidence Extraction: Analysis of Scientific Figures from Studies of Molecular Interactions. - Gully Burns; Xiangyang Shi; Yue Wu 001; Huaigu Cao; Prem Natarajan (ISWC (Best Workshop Papers), 2018)

Molecular Biology Open Access Pubmed Word and Sentence Representations. - Gully Burns; Xiangci Li; Nanyun Peng 001 (Zenodo, 2018)

Linking Educational Resources on Data Science. - José Luis Ambite; Jonathan Gordon 001; Lily Fierro; Gully Burns; Joel Mathew (AAAI, 2019)

Layout-aware Subfigure Decomposition for Complex Figures in the Biomedical Literature. - Xiangyang Shi; Yue Wu 001; Huaigu Cao; Gully Burns; Prem Natarajan (ICASSP, 2019)

Building deep learning models for evidence classification from the open access biomedical literature. - Gully A. Burns; Xiangci Li; Nanyun Peng 001 (Database J. Biol. Databases Curation, 2019)

Discourse Tagging for Scientific Evidence Extraction. - Xiangci Li; Gully A. Burns; Nanyun Peng 001 (CoRR, 2019)

Advancing the international data science workforce through shared training and education. - John D. Van Horn; Sumiko Abe; José Luis Ambite; Teresa K. Attwood; Niall Beard; Louisa Bellis; Avnish Bhattrai; Alex A. T. Bui; Gully Burns; Lily Fierro; Jonathan Gordon 001; Jeffrey S. Grethe; et al. (F1000Research, 2019)

A Paragraph-level Multi-task Learning Model for Scientific Fact-Verification. - Xiangci Li; Gully A. Burns; Nanyun Peng 001 (SDU@AAAI, 2021)

MELINDA: A Multimodal Dataset for Biomedical Experiment Method Classification. - Te-Lin Wu; Shikhar Singh; Sayan Paul; Gully A. Burns; Nanyun Peng 001 (AAAI, 2021)

Scientific Discourse Tagging for Evidence Extraction. - Xiangci Li; Gully A. Burns; Nanyun Peng 001 (EACL, 2021)

Standardization of assay representation in the Ontology for Biomedical Investigations. - Randi Vita; Jie Zheng 001; Rebecca C. Jackson; Damion M. Dooley; James A. Overton; Mark A. Miller; Daniel C. Berrios; Richard H. Scheuermann; Yongqun He; Hande Küçük-McGinty; Mathias Brochhausen; Aisyah Yu Lin; et al. (Database J. Biol. Databases Curation, 2021)

BD2K Training Coordinating Center's ERuDIte: The Educational Resource Discovery Index for Data Science. - José Luis Ambite; Lily Fierro; Jonathan Gordon 001; Gully A. P. C. Burns; Florian Geigl; Kristina Lerman; John D. Van Horn (IEEE Trans. Emerg. Top. Comput., 2021)