ResiRCA: A Resilient Energy Harvesting ReRAM Crossbar-Based Accelerator for Intelligent Embedded Processors. - Keni Qiu; Nicholas Jao; Mengying Zhao; Cyan Subhra Mishra; Gulsum Gudukbay; Sethu Jose; Jack Sampson; Mahmut Taylan Kandemir; Vijaykrishnan Narayanan (HPCA, 2020)

GYAN: Accelerating Bioinformatics Tools in Galaxy with GPU-Aware Computation Mapping. - Gulsum Gudukbay; Jashwant Raj Gunasekaran; Yilin Feng; Mahmut T. Kandemir; Anton Nekrutenko; Chita R. Das; Paul Medvedev; Björn A. Grüning; Nate Coraor; Nathan Roach; Enis Afgan (IPDPS Workshops, 2021)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)

Architecture-Aware Currying. - Mahmut Taylan Kandemir; Gulsum Gudukbay Akbulut; Wonil Choi; Mustafa Karaköy (PACT, 2023)

Data Recomputation for Multithreaded Applications. - Gulsum Gudukbay Akbulut; Mahmut T. Kandemir; Mustafa Karaköy; Wonil Choi (ICCAD, 2023)

License Forecasting and Scheduling for HPC. - Ahmed Burak Gulhan; Gulsum Gudukbay Akbulut; Amit Amritkar; Jack Sampson; Vasant G. Honavar; Adam Focht; Chuck Pavloski; Mahmut T. Kandemir (MASCOTS, 2023)

PIFS-Rec: Process-In-Fabric-Switch for Large-Scale Recommendation System Inferences. - Pingyi Huo; Anusha Devulapally; Hasan Al Maruf; Minseo Park; Krishnakumar Nair; Meena Arunachalam; Gulsum Gudukbay Akbulut; Mahmut Taylan Kandemir; Vijaykrishnan Narayanan (MICRO, 2024)

SpotVerse: Optimizing Bioinformatics Workflows with Multi-Region Spot Instances in Galaxy and Beyond. - Myungjun Son; Gulsum Gudukbay Akbulut; Mahmut Taylan Kandemir (Middleware, 2024)

Parallelization Strategies for DLRM Embedding Bag Operator on AMD CPUs. - Krishnakumar Nair; Avinash-Chandra Pandey; Siddappa Karabannavar; Meena Arunachalam; John Kalamatianos; Varun Agrawal; Saurabh Gupta 002; Ashish Sirasao; Elliott Delaye; Steven K. Reinhardt; Rajesh Vivekanandham; Ralph Wittig; et al. (IEEE Micro, 2024)

FPGA-based accelerator for adaptive banded event alignment in nanopore sequencing data analysis. - Yilin Feng; Zheyu Li; Gulsum Gudukbay Akbulut; Vijaykrishnan Narayanan; Mahmut Taylan Kandemir; Chita R. Das (BMC Bioinform., 2025)