Protein sequence and structure alignments within one framework. - Gundolf Schenk; Thomas Margraf; Andrew Ernest Torda (Algorithms Mol. Biol., 2008)

The SALAMI protein structure search server. - Thomas Margraf; Gundolf Schenk; Andrew Ernest Torda (Nucleic Acids Res., 2009)

Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes. - Beau Norgeot; Kathleen Muenzen; Thomas A. Peterson; Xuancheng Fan; Benjamin S. Glicksberg; Gundolf Schenk; Eugenia Rutenberg; Boris Oskotsky; Marina Sirota; Jinoos Yazdany; Gabriela Schmajuk; Dana Ludwig; et al. (npj Digit. Medicine, 2020)

Deidentifying a Corpus of 100 Million Clinical Text Documents for Information Extraction: Lessons Learned. - Lakshmi Radhakrishnan; Gundolf Schenk; Kathlene Muenzen; Boris Oskotsky; Sharat Israni; Atul J. Butte (AMIA, 2022)

Exaflops Biomedical Knowledge Graph Analytics. - Ramakrishnan Kannan; Piyush Sao; Hao Lu 001; Jakub Kurzak; Gundolf Schenk; Yongmei Shi; Seung-Hwan Lim; Sharat Israni; Vijay Thakkar; Guojing Cong; Robert M. Patton; Sergio E. Baranzini; et al. (SC, 2022)

The scalable precision medicine open knowledge engine (SPOKE): a massive knowledge graph of biomedical information. - John H. Morris; Karthik Soman; Rabia E. Akbas; Xiaoyuan Zhou; Brett Smith; Elaine C. Meng; Conrad C. Huang; Gabriel Cerono; Gundolf Schenk; Angela Rizk-Jackson; Adil Harroud; Lauren M. Sanders; et al. (Bioinform., 2023)