Fast Needleman-Wunsch scanning of sequence databanks on a massively parallel computer. - Erik Wallin; Christian Wettergren; Fredrik Hedman; Gunnar von Heijne (Comput. Appl. Biosci., 1993)

TopPred II: an improved software for membrane protein structure predictions. - M. Gonzalo Claros; Gunnar von Heijne (Comput. Appl. Biosci., 1994)

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites. - Henrik Nielsen; Jacob Engelbrecht; Søren Brunak; Gunnar von Heijne (Int. J. Neural Syst., 1997)

[Invited Lecture] Picking out membrane proteins. - Gunnar von Heijne (German Conference on Bioinformatics, 1998)

A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. - Erik L. L. Sonnhammer; Gunnar von Heijne; Anders Krogh (ISMB, 1998)

PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. - Mauro Amico; Michele Finelli; Ivan Rossi; Andrea Zauli; Arne Elofsson; Håkan Viklund; Gunnar von Heijne; David Jones; Anders Krogh; Piero Fariselli; Pier Luigi Martelli; Rita Casadio (Nucleic Acids Res., 2006)