Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry. - Zoya Dimitrova; David S. Campo; Sumathi Ramachandran; Gilberto Vaughan; Lilia Ganova-Raeva; Yulin Lin; Joseph C. Forbi; Guo-liang Xia; Pavel Skums; Brian L. Pearlman; Yuri Khudyakov (BIBM Workshops, 2011)

Host-specific HCV evolution and response to the combined interferon and ribavirin therapy. - James Lara; John E. Tavis; Maureen J. Donlin; William M. Lee; He-Jun Yuan; Brian L. Pearlman; Gilberto Vaughan; Joseph C. Forbi; Guo-liang Xia; Yuri Khudyakov (BIBM Workshops, 2011)

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry. - Zoya Dimitrova; David S. Campo; Sumathi Ramachandran; Gilberto Vaughan; Lilia Ganova-Raeva; Yulin Lin; Joseph C. Forbi; Guo-liang Xia; Pavel Skums; Brian L. Pearlman; Yuri Khudyakov (Silico Biol., 2012)

Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon. - James Lara; John E. Tavis; Maureen J. Donlin; William M. Lee; He-Jun Yuan; Brian L. Pearlman; Gilberto Vaughan; Joseph C. Forbi; Guo-liang Xia; Yuri Khudyakov (Silico Biol., 2012)

New computational methods for assessing the genetic relatedness of close viral variants. - David S. Campo; Zoya Dimitrova; Guo-liang Xia; Pavel Skums; Lilia Ganova-Raeva; Yuri Khudyakov (ICCABS, 2014)

Modeling the functional state of the reverse transcriptase of hepatitis B virus and its application to probing drug-protein interaction. - Xiaojun Xu; Hong Thai; Kathryn M. Kitrinos; Guo-liang Xia; Anuj Gaggar; Matthew Paulson; Lilia Ganova-Raeva; Yury Khudyakov; James Lara (BMC Bioinform., 2016)

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. - Pavel Skums; Alex Zelikovsky; Rahul Singh; Walker Gussler; Zoya Dimitrova; Sergey Knyazev; Igor Mandric; Sumathi Ramachandran; David S. Campo; Deeptanshu Jha; Leonid Bunimovich; Elizabeth Costenbader; et al. (Bioinform., 2018)