ORIENT: Integrate Ontology Engineering into Industry Tooling Environment. - Lei Zhang 007; Yong Yu 001; Jing Lu; Chenxi Lin; Kewei Tu; MingChuan Guo; Zhuo Zhang; Guo Tong Xie; Zhong Su; Yue Pan (ISWC, 2004)

Market Intelligence Portal: An entity-based system for managing market intelligence. - Zhong Su; Jianmin Jiang; Tao Liu; Guo Tong Xie; Yue Pan (IBM Syst. J., 2004)

The Object Management Group Ontology Definition Metamodel. - Robert M. Colomb; Kerry Raymond; Lewis Hart; Patrick Emery; Chris Welty; Guo Tong Xie; Elisa F. Kendall (Ontologies for Software Engineering and Software Technology, 2006)

Towards a Complete OWL Ontology Benchmark. - Li Ma 002; Yang Yang 041; Zhaoming Qiu; Guo Tong Xie; Yue Pan; Shengping Liu (ESWC, 2006)

Semantic Service Mediation. - Liangzhao Zeng; Boualem Benatallah; Guo Tong Xie; Hui Lei 001 (ICSOC, 2006)

A Model Driven Approach for Building OWL DL and OWL Full Ontologies. - Saartje Brockmans; Robert M. Colomb; Peter Haase 001; Elisa F. Kendall; Evan K. Wallace; Christopher A. Welty; Guo Tong Xie (ISWC, 2006)

Model-Driven Ontology Engineering. - Yue Pan; Guo Tong Xie; Li Ma 002; Yang Yang 041; Zhaoming Qiu; Juhnyoung Lee (J. Data Semant., 2006)

The Design and Implementation of a Semantic Service Mediation System. - Liangzhao Zeng; Hui Lei 001; Michael J. Dikun; Henry Chang; Guo Tong Xie (ICEBE, 2007)

EIAW: Towards a Business-Friendly Data Warehouse Using Semantic Web Technologies. - Guo Tong Xie; Yang Yang 041; Shengping Liu; Zhaoming Qiu; Yue Pan; Xiongzhi Zhou (ISWC/ASWC, 2007)

A Semantic QoS-Aware Discovery Framework for Web Services. - Qian Ma 010; Hao Wang 208; Ying Li 012; Guotong Xie; Feng Liu (ICWS, 2008)

Supporting Ontology-Based Dynamic Property and Classification in WebSphere Metadata Server. - Shengping Liu; Yang Yang 041; Guo Tong Xie; Chen Wang 020; Feng Cao; Cassio Dos Santos; Robert J. Schloss; Yue Pan; Kevin Shank; John Colgrave (ISWC, 2008)

MDS++: Supporting Ontology-based Dynamic Classification in WebSphere Metadata Server. - Shengping Liu; Yang Yang 041; Guo Tong Xie; Chen Wang 020; Feng Cao; Cassio Dos Santos; Robert J. Schloss; Yue Pan; Kevin Shank; John Colgrave (ISWC (Posters & Demos), 2008)

A System to Enable Relational Persistence and Semantic Web style Access Simultaneously for Objects. - Jing Mei; Guo Tong Xie; Shengping Liu; Lei Zhang 007; Yue Pan (ISWC (Posters & Demos), 2008)

Making URIs Published on Data Web RDF Dereferencable. - Jing Mei; Guo Tong Xie; Yuan Ni; Shengping Liu; Hanyu Li; Yue Pan (ISWC (Posters & Demos), 2008)

UMRR: Towards an Enterprise-Wide Web of Models. - Jing Mei; Guo Tong Xie; Lei Zhang 007; Shengping Liu; Robert J. Schloss; Yue Pan; Yuan Ni (ISWC (Posters & Demos), 2008)

iSMART: Ontology-based Semantic Query of CDA Documents. - Shengping Liu; Yuan Ni; Jing Mei; Hanyu Li; Guo Tong Xie; Gang Hu 001; Haifeng Liu 005; Xueqiao Hou; Yue Pan (AMIA, 2009)

A Practical Approach for Scalable Conjunctive Query Answering on Acyclic EL+ mathcal{EL}^+ Knowledge Base. - Jing Mei; Shengping Liu; Guo Tong Xie; Aditya Kalyanpur; Achille Fokoue; Yuan Ni; Hanyu Li; Yue Pan (ISWC, 2009)

Actively Learning Ontology Matching via User Interaction. - Feng Shi; Juanzi Li; Jie Tang 001; Guo Tong Xie; Hanyu Li (ISWC, 2009)

A gauss function based approach for unbalanced ontology matching. - Qian Zhong; Hanyu Li; Juanzi Li; Guo Tong Xie; Jie Tang 001; Lizhu Zhou; Yue Pan (SIGMOD Conference, 2009)

sMash: semantic-based mashup navigation for data API network. - Bin Lu; Zhaohui Wu 001; Yuan Ni; Guo Tong Xie; Chunying Zhou; Huajun Chen (WWW, 2009)

Mashup by Surfing a Web of Data APIs. - Huajun Chen; Bin Lu; Yuan Ni; Guo Tong Xie; Chunying Zhou; Jinhua Mi; Zhaohui Wu 001 (Proc. VLDB Endow., 2009)

A Semantic Bayesian Network for Web Mashup Network Construction. - Chunying Zhou; Huajun Chen; Zhipeng Peng; Yuan Ni; Guotong Xie (GreenCom/CPSCom, 2010)

An OCL-compliant GELLO Engine. - Jing Mei; Haifeng Liu 005; Guo Tong Xie; Shengping Liu; Baoyao Zhou (MIE, 2011)

Promoting Integrated Social and Medical Care through Semantic Integration and Context Visualization. - Weijia Shen; Guotong Xie; Kavitha Srinivas; Anastasios Kementsietsidis; Jason B. Ellis; Thomas Erickson; Kevin McAuliffe; Gang Hu 001; Wen Sun (CSWS, 2013)

An Efficacy Driven Approach for Medication Recommendation in Type 2 Diabetes Treatment Using Data Mining Techniques. - Haifeng Liu 005; Guo Tong Xie; Jing Mei; Weijia Shen; Wen Sun; Xiang Li 013 (MedInfo, 2013)

A Framework for Evaluating Sequential Clinical Interventions with Disease Progression. - Jing Mei; Haifeng Liu 005; Weijia Shen; Wen Sun; Gang Hu 001; Guo Tong Xie; Yue Pan (MedInfo, 2013)

Coordinating Social Care and Healthcare using Semantic Web Technologies. - Spyros Kotoulas; Vanessa López; Martin Stephenson; Pierpaolo Tommasi; Weijia Shen; Gang Hu 001; Marco Luca Sbodio; Veli Bicer; Anastasios Kementsietsidis; M. Mustafa Rafique; Jason B. Ellis; Thomas Erickson; et al. (ISWC (Posters & Demos), 2013)

Towards Pathway Variation Identification: Aligning Patient Records with a Care Pathway. - Haifeng Liu 005; Yang Liu 021; Xiang Li 013; Guo Tong Xie; Geetika T. Lakshmanan (CIKM, 2014)

SPARQL Query Recommendation for Exploring RDF Repositories. - Boliang Chen; Jing Mei; Wen Sun; Ruilong Su; Haofen Wang; Gang Hu 001; Guotong Xie; Yong Yu 001 (CSWS, 2014)

Automatic Variance Analysis of Multistage Care Pathways. - Xiang Li 013; Haifeng Liu 005; Shilei Zhang; Jing Mei; Guotong Xie; Yiqin Yu; Jing Li; Geetika T. Lakshmanan (MIE, 2014)

Embracing case management for computerization of care pathways. - Jing Mei; Jing Li; Yiqin Yu; Xiang Li 013; Haifeng Liu 005; Guotong Xie (MIE, 2014)

Estimating the Impact of Prevention Action: A simulation Model of Cervical Cancer Progression. - Michal Rosen-Zvi; Lavi Shpigelman; Alan Kalton; Omer Weissbrod; Saheed Akindeinde; Soren Benefeldt; Andrew Bentley; Terry Everett; Joseph Jajinskiji; Emmanuel Kweyu; Chalapathy Neti; Joe Saab; et al. (MIE, 2014)

Care Pathway Workbench: Evidence Harmonization from Guideline and Data. - Yiqin Yu; Haifeng Liu 005; Jing Li; Xiang Li 013; Jing Mei; Guotong Xie; Adam Perer; Fei Wang 001; Jianying Hu (MIE, 2014)

Building Structured Personal Health Records from Photographs of Printed Medical Records. - Xiang Li 013; Gang Hu 001; Xiaofei Teng; Guotong Xie (AMIA, 2015)

Case Analytics Workbench: Platform for Hybrid Process Model Creation and Evolution. - Yiqin Yu; Xiang Li 013; Haifeng Liu 005; Jing Mei; Nirmal Mukhi; Vatche Ishakian; Guotong Xie; Geetika T. Lakshmanan; Mike Marin (BPM, 2015)

Mining Temporal and Data Constraints Associated with Outcomes for Care Pathways. - Xiang Li 013; Haifeng Liu 005; Jing Mei; Yiqin Yu; Guo Tong Xie (MedInfo, 2015)

A Decision Fusion Framework for Treatment Recommendation Systems. - Jing Mei; Haifeng Liu 005; Xiang Li 013; Guo Tong Xie; Yiqin Yu (MedInfo, 2015)

Analysis of Care Pathway Variation Patterns in Patient Records. - Xiang Li 013; Jing Mei; Haifeng Liu 005; Yiqin Yu; Guotong Xie; Jianying Hu; Fei Wang 001 (MIE, 2015)

Synthesizing Analytic Evidence to Refine Care Pathways. - Haifeng Liu 005; Xiang Li 013; Yiqin Yu; Jing Mei; Guo Tong Xie; Adam Perer; Fei Wang 001; Jianying Hu (MIE, 2015)

Outcome-driven Evaluation Metrics for Treatment Recommendation Systems. - Jing Mei; Haifeng Liu 005; Xiang Li 013; Yiqin Yu; Guotong Xie (MIE, 2015)

SQLGraph: An Efficient Relational-Based Property Graph Store. - Wen Sun; Achille Fokoue; Kavitha Srinivas; Anastasios Kementsietsidis; Gang Hu 001; Guo Tong Xie (SIGMOD Conference, 2015)

Integrated Machine Learning Approaches for Predicting Ischemic Stroke and Thromboembolism in Atrial Fibrillation. - Xiang Li 013; Haifeng Liu 005; Xin Du; Ping Zhang 016; Gang Hu 001; Guo Tong Xie; Shijing Guo; Meilin Xu; Xiaoping Xie (AMIA, 2016)

Probabilistic-Mismatch Anomaly Detection: Do One's Medications Match with the Diagnoses. - Lingxiao Zhang; Xiang Li 013; Haifeng Liu 005; Jing Mei; Gang Hu 001; Junfeng Zhao 001; Yanzhen Zou; Bing Xie; Guotong Xie (ICDM, 2016)

Accelerate Healthcare Data Analytics: An Agile Practice to Perform Collaborative and Reproducible Analyses. - Bibo Hao; Wen Sun; Yiqin Yu; Jing Li; Gang Hu 001; Guotong Xie (MIE, 2016)

Using Frequent Item Set Mining and Feature Selection Methods to Identify Interacted Risk Factors - The Atrial Fibrillation Case Study. - Xiang Li 013; Haifeng Liu 005; Xin Du; Gang Hu 001; Guotong Xie; Ping Zhang 016 (MIE, 2016)

Feature++: Automatic Feature Construction for Clinical Data Analysis. - Wen Sun; Bibo Hao; Yiqin Yu; Jing Li; Gang Hu 001; Guo Tong Xie (MIE, 2016)

Building Evidence Graph for Clinical Decision Support. - Jing Mei; Wen Sun; Jing Li; Haifeng Liu 005; Xiang Li 013; Yiqin Yu; Guotong Xie (ISWC (Posters & Demos), 2016)

TaGiTeD: Predictive Task Guided Tensor Decomposition for Representation Learning from Electronic Health Records. - Kai Yang; Xiang Li 013; Haifeng Liu 005; Jing Mei; Guo Tong Xie; Junfeng Zhao 001; Bing Xie; Fei Wang 001 (AAAI, 2017)

Interactive Machine Learning for Medical Research: A Framework to Enhance the Engagement of Clinical Researchers. - Bibo Hao; Yiqin Yu; Wen Sun; Yingxue Li; Guotong Xie (AMIA, 2017)

Bootstrap-based Feature Selection to Balance Model Discrimination and Predictor Significance: A Study of Stroke Prediction in Atrial Fibrillation. - Xiang Li 013; Zhaonan Sun; Xin Du; Haifeng Liu 005; Gang Hu 001; Guotong Xie (AMIA, 2017)

Learning Doctors' Medicine Prescription Pattern for Chronic Disease Treatment by Mining Electronic Health Records: A Multi-Task Learning Approach. - Eryu Xia; Jing Mei; Guotong Xie; Xuejun Li; Zhibin Li; Meilin Xu (AMIA, 2017)

Integrating Temporal Pattern Mining in Ischemic Stroke Prediction and Treatment Pathway Discovery for Atrial Fibrillation. - Shijing Guo; Xiang Li 013; Haifeng Liu 005; Ping Zhang 016; Xin Du; Guotong Xie; Fei Wang 001 (CRI, 2017)

Exploring transfer learning for gastrointestinal bleeding detection on small-size imbalanced endoscopy images. - Xiuli Li; Hao Zhang; Xiaolu Zhang; Hao Liu; Guotong Xie (EMBC, 2017)

Group-Based Trajectory Analysis for Long-Term Use of Warfarin Therapy in Atrial Fibrillation Patients. - Shijing Guo; Xiang Li 013; Xin Du; Haifeng Liu 005; Guotong Xie (MedInfo, 2017)

Using Machine Learning Models to Predict In-Hospital Mortality for ST-Elevation Myocardial Infarction Patients. - Xiang Li 013; Haifeng Liu 005; Jingang Yang; Guotong Xie; Meilin Xu; Yuejin Yang (MedInfo, 2017)

Precision Cohort Finding with Outcome-Driven Similarity Analytics: A Case Study of Patients with Atrial Fibrillation. - Haifeng Liu 005; Xiang Li 013; Guotong Xie; Xin Du; Ping Zhang 016; Chengming Gu; Jingyi Hu (MedInfo, 2017)

Deep Diabetologist: Learning to Prescribe Hypoglycemic Medications with Recurrent Neural Networks. - Jing Mei; Shiwan Zhao; Feng Jin; Lingxiao Zhang; Haifeng Liu 005; Xiang Li 013; Guotong Xie; Xuejun Li; Meilin Xu (MedInfo, 2017)

A Deep Learning-Based Method for Similar Patient Question Retrieval in Chinese. - Guo Yu Tang; Yuan Ni; Guo Tong Xie; Xin Li Fan; Yan Ling Shi (MedInfo, 2017)

Gathering Real World Evidence with Cluster Analysis for Clinical Decision Support. - Eryu Xia; Haifeng Liu 005; Jing Li; Jing Mei; Xuejun Li; Enliang Xu; Xiang Li 013; Gang Hu 001; Guotong Xie; Meilin Xu (MedInfo, 2017)

Applying Risk Models on Patients with Unknown Predictor Values: An Incremental Learning Approach. - Enliang Xu; Xiang Li 013; Jing Mei; Shiwan Zhao; Gang Hu 001; Eryu Xia; Haifeng Liu 005; Guotong Xie; Meilin Xu; Xuejun Li (MedInfo, 2017)

Personal Health Self-Management in a Data Perspective. - Yiqin Yu; Xiang Li 013; Gang Hu 001; Haifeng Liu 005; Jing Mei; Yuan Ni; Guoyu Tang; Guotong Xie; Weiming Xu (MedInfo, 2017)

Lung nodule malignancy prediction using multi-task convolutional neural network. - Xiuli Li; Yueying Kao; Wei Shen; Xiang Li 013; Guotong Xie (Computer-Aided Diagnosis, 2017)

Developing Knowledge-enhanced Chronic Disease Risk Prediction Models from Regional EHR Repositories. - Jing Mei; Eryu Xia; Xiang Li 013; Guotong Xie (CoRR, 2017)

Group-Based Trajectory Analysis of HIV-1 Patients. - Yiying Hu; Xiang Li 013; Wenqing Lei; Guotong Xie (AMIA, 2018)

Integrating Clinical Knowledge and Real-World Evidence for Type 2 Diabetes Treatment. - Xingzhi Sun 002; Wei Zhao; Lei Zuo; Alexandra Dumitriu; Chuang-Chung Lee; Nan Cui; Xiyang Liao; Tingting Zhao; Xuehan Jiang; Zhuoyang Xu; Gang Hu 001; Guotong Xie; et al. (AMIA, 2019)

Inpatient2Vec: Medical Representation Learning for Inpatients. - Ying Wang; Xiao Xu; Tao Jin 001; Xiang Li 013; Guotong Xie; Jianmin Wang 001 (BIBM, 2019)

PANLP at MEDIQA 2019: Pre-trained Language Models, Transfer Learning and Knowledge Distillation. - Wei Zhu 016; Xiaofeng Zhou; Keqiang Wang; Xun Luo; Xiepeng Li; Yuan Ni; Guotong Xie (BioNLP@ACL, 2019)

TASP: A Time-Phased Model for Sepsis Prediction. - Xiang Li 013; Yanni Kang; Xiaoyu Jia 002; Junmei Wang; Guotong Xie (CinC, 2019)

Predicting the outbreak of the hand-foot-mouth diseases in China using recurrent neural network. - Wenxiao Jia; Xiang Li 013; Kewei Tan; Guotong Xie (ICHI, 2019)

Using Temporal Feature Aggregation and Gradient Boosting Tree on Missing Data Imputation. - Yanni Kang; Xiaoyu Jia 002; Xiang Li 013; Guotong Xie (ICHI, 2019)

IEEE ICHI Data Analytics Challenge on Missing data Imputation by Amelia II. - Xiaoshuang Liu; Xinyue Ma; Xiaoyan Meng; Xiang Li 013; Guotong Xie (ICHI, 2019)

Estimating Missing Values in Multivariate-Time-Series Clinical Data using Gradient Boosting Tree on Temporal and Cross-variable Features. - Xiao Xu; Junmei Wang; Xian Xu; Yuyao Sun; Quanhe Chen; Xiang Li 013; Guotong Xie (ICHI, 2019)

The Dr-KGQA System for Automatically Answering Medication Related Questions in Chinese. - Wei Zhu 016; Yuan Ni; Guotong Xie; Xiaofeng Zhou; Cai Chen (ICHI, 2019)

An Approach of Integrating Domain Knowledge into Data-Driven Diagnostic Model. - Guanxu Su; Jianghui Wen; Zhaowei Zhu; Zhuo Liu; Wei Zhao; Xingzhi Sun 002; Gang Hu 001; Guotong Xie (MedInfo, 2019)

Analysis of the Health Information Needs of Diabetics in China. - Xiaofeng Zhou; Yuan Ni; Guotong Xie; Wei Zhu 016; Cai Chen; Tianhao Wang 010; Zhigang Pan (MedInfo, 2019)

Structure-Aware Noise Reduction Generative Adversarial Network for Optical Coherence Tomography Image. - Yan Guo 006; Kang Wang; Suhui Yang; Yue Wang; Peng Gao 015; Guotong Xie; Chuanfeng Lv; Bin Lv (OMIA@MICCAI, 2019)

Region Focus Network for Joint Optic Disc and Cup Segmentation. - Ge Li; Changsheng Li; Chan Zeng; Peng Gao 015; Guotong Xie (AAAI, 2020)

A Clinically Practical and Interpretable Deep Model for ICU Mortality Prediction with External Validation. - Yanni Kang; Xiaoyu Jia 002; Yiying Hu; Jianying Guo; Xiang Li 013; Guo Tong Xie; Kaifei Wang (AMIA, 2020)

An Interpretable Machine Learning Survival Model for Predicting Long-term Kidney Outcomes in IgA Nephropathy. - Yingxue Li; Tingyu Chen; Tiange Chen; Xiang Li 013; Caihong Zeng; Zhihong Liu; Guotong Xie (AMIA, 2020)

Improving Anticoagulant Treatment Strategies of Atrial Fibrillation Using Reinforcement Learning. - Lei Zuo; Xin Du; Wei Zhao; Chao Jiang; Shijun Xia; Liu He; Rong Liu; Ribo Tang; Rong Bai; Jianzeng Dong; Xingzhi Sun 002; Gang Hu 001; et al. (AMIA, 2020)

DeepComp: Which Competing Event Will Hit the Patient First? - Yingxue Li; Wenxiao Jia; Yashu Kang; Tiange Chen; Xiang Li 013; Xin Du; Jianzeng Dong; Changsheng Ma; Fei Wang 001; Guotong Xie (BIBM, 2020)

Semi-supervised Active Learning for Instance Segmentation via Scoring Predictions. - Jun Wang 123; Shaoguo Wen; Jianghua Yu; Kaixing Chen; Xin Zhou; Peng Gao 015; Guotong Xie; Changsheng Li (BMVC, 2020)

Mining Infrequent High-Quality Phrases from Domain-Specific Corpora. - Li Wang; Wei Zhu 016; Sihang Jiang; Sheng Zhang 027; Keqiang Wang; Yuan Ni; Guotong Xie; Yanghua Xiao (CIKM, 2020)

Correlation-Guided Network for Fine-Grained Classification of Glomerular lesions in Kidney Histopathology Images. - Fengyi Li; Yang Nan 002; Xiaoshuai Hou; Chunmei Xie; Jiaping Wang; Chuanfeng Lv; Guo Tong Xie (EMBC, 2020)

Pre-training Entity Relation Encoder with Intra-span and Inter-span Information. - Yijun Wang; Changzhi Sun; Yuanbin Wu; Junchi Yan; Peng Gao 015; Guotong Xie (EMNLP (1), 2020)

A Deep Reinforcement Learning Approach for Type 2 Diabetes Mellitus Treatment. - Zhuo Liu; Linong Ji; Xuehan Jiang; Wei Zhao; Xiyang Liao; Tingting Zhao; Siqi Liu; Xingzhi Sun 002; Gang Hu 001; Mengling Feng; Guotong Xie (ICHI, 2020)

Estimating the number of imported COVID-19 risks by traffic from other districts using population mobility data. - Xiaoshuang Liu; Xiao Xu; Xiang Li 013; Guotong Xie (ICHI, 2020)

Automatic Student Network Search for Knowledge Distillation. - Zhexi Zhang; Wei Zhu 016; Junchi Yan; Peng Gao 015; Guotong Xie (ICPR, 2020)

Lesion-Aware Segmentation Network for Atrophy and Detachment of Pathological Myopia on Fundus Images. - Yan Guo 006; Rui Wang; Xia Zhou; Yang Liu 021; Lilong Wang; Chuanfeng Lv; Bin Lv; Guotong Xie (ISBI, 2020)

A Triple-Stage Self-Guided Network for Kidney Tumor Segmentation. - Xiaoshuai Hou; Chunmei Xie; Fengyi Li; Jiaping Wang; Chuanfeng Lv; Guotong Xie; Yang Nan 002 (ISBI, 2020)

Hierarchy-Constrained Network for Corneal Tissue Segmentation Based on Anterior Segment OCT Images. - Yang Liu 021; Dongfang Li; Yan Guo 006; Xia Zhou; Yanling Dong; Zhen Guo; Guotong Xie; Chuanfeng Lv; Bin Lv (ISBI, 2020)

OCT Image Quality Evaluation Based on Deep and Shallow Features Fusion Network. - Rui Wang; Dongyi Fan; Bin Lv; Min Wang; Qienyuan Zhou; Chuanfeng Lv; Guotong Xie; Lilong Wang (ISBI, 2020)

Unsupervised Domain Adaptation for Cross-Device OCT Lesion Detection via Learning Adaptive Features. - Suhui Yang; Xia Zhou; Jun Wang 123; Guotong Xie; Chuanfeng Lv; Peng Gao 015; Bin Lv (ISBI, 2020)

Memory-Augmented Anomaly Generative Adversarial Network for Retinal OCT Images Screening. - Chengfen Zhang; Yue Wang; Xinyu Zhao; Yan Guo 006; Guotong Xie; Chuanfeng Lv; Bin Lv (ISBI, 2020)

Positive-Aware Lesion Detection Network with Cross-scale Feature Pyramid for OCT Images. - Dongyi Fan; Chengfen Zhang; Bin Lv; Lilong Wang; Guanzheng Wang; Min Wang; Chuanfeng Lv; Guotong Xie (MICCAI (5), 2020)

A Multiple Models Ensembling Method in TREC Deep Learning. - Liyu Cao; Yixuan Qiao; Hao Chen; Peng Gao 015; Yuan Ni; Guo Tong Xie (TREC, 2020)

PASH at TREC 2020 Deep Learning Track: Dense Matching for Nested Ranking. - Yixuan Qiao; Hao Chen; Liyu Cao; Liping Chen; Pengyong Li; Jun Wang 123; Peng Gao 015; Yuan Ni; Guotong Xie (TREC, 2020)

AutoRC: Improving BERT Based Relation Classification Models via Architecture Search. - Wei Zhu 016; Xipeng Qiu; Yuan Ni; Guotong Xie (CoRR, 2020)

Learn molecular representations from large-scale unlabeled molecules for drug discovery. - Pengyong Li; Jun Wang 123; Yixuan Qiao; Hao Chen; Yihuan Yu; Xiaojun Yao; Peng Gao 015; Guotong Xie; Sen Song (CoRR, 2020)

A Multi-directional Approach for Missing Value Estimation in Multivariate Time Series Clinical Data. - Xiao Xu; Xiaoshuang Liu; Yanni Kang; Xian Xu; Junmei Wang; Yuyao Sun; Quanhe Chen; Xiaoyu Jia 002; Xinyue Ma; Xiaoyan Meng; Xiang Li 013; Guotong Xie (J. Heal. Informatics Res., 2020)

Global Attention Decoder for Chinese Spelling Error Correction. - Zhao Guo; Yuan Ni; Keqiang Wang; Wei Zhu 016; Guotong Xie (ACL/IJCNLP (Findings), 2021)

Inpatinets' FWA Detection: Mismatch between the Clinical Path and Medical Condition. - Xuehan Jiang; Rui Tang; Xingzhi Sun 002; Gang Hu 001; Guotong Xie (BIBM, 2021)

Representation Learning for Multi-omics Data with Heterogeneous Gene Regulatory Network. - Xiaoshuang Liu; Xian Xu; Xiao Xu; Xiang Li 013; Guotong Xie (BIBM, 2021)

paht_nlp @ MEDIQA 2021: Multi-grained Query Focused Multi-Answer Summarization. - Wei Zhu 016; Yilong He; Ling Chai; Yunxiao Fan; Yuan Ni; Guotong Xie; Xiaoling Wang 004 (BioNLP@NAACL-HLT, 2021)

GAML-BERT: Improving BERT Early Exiting by Gradient Aligned Mutual Learning. - Wei Zhu 016; Xiaoling Wang 004; Yuan Ni; Guotong Xie (EMNLP (1), 2021)

Predictive Modeling of Clinical Events with Mutual Enhancement Between Longitudinal Patient Records and Medical Knowledge Graph. - Xiao Xu; Xian Xu; Yuyao Sun; Xiaoshuang Liu; Xiang Li 013; Guotong Xie; Fei Wang 001 (ICDM, 2021)

Embedding Electronic Health Records to Learn BERT-based Models for Diagnostic Decision Support. - Rui Tang; Haishen Yao; Zhaowei Zhu; Xingzhi Sun 002; Gang Hu 001; Yichong Li; Guotong Xie (ICHI, 2021)

Pairwise Half-graph Discrimination: A Simple Graph-level Self-supervised Strategy for Pre-training Graph Neural Networks. - Pengyong Li; Jun Wang 123; Ziliang Li; Yixuan Qiao; Xianggen Liu; Fei Ma; Peng Gao 015; Sen Song; Guotong Xie (IJCAI, 2021)

Dialogue Based Disease Screening Through Domain Customized Reinforcement Learning. - Zhuo Liu; Yanxuan Li; Xingzhi Sun 002; Fei Wang 001; Gang Hu 001; Guotong Xie (KDD, 2021)

DeepStationing: Thoracic Lymph Node Station Parsing in CT Scans Using Anatomical Context Encoding and Key Organ Auto-Search. - Dazhou Guo; Xianghua Ye; Jia Ge; Xing Di; Le Lu 001; Lingyun Huang; Guotong Xie; Jing Xiao 006; Zhongjie Lu; Ling Peng; Senxiang Yan; Dakai Jin (MICCAI (5), 2021)

Learning from Subjective Ratings Using Auto-Decoded Deep Latent Embeddings. - Bowen Li; Xinping Ren; Ke Yan 006; Le Lu 001; Lingyun Huang; Guotong Xie; Jing Xiao 006; Dar-In Tai; Adam P. Harrison (MICCAI (5), 2021)

SAME: Deformable Image Registration Based on Self-supervised Anatomical Embeddings. - Fengze Liu; Ke Yan 006; Adam P. Harrison; Dazhou Guo; Le Lu 001; Alan L. Yuille; Lingyun Huang; Guotong Xie; Jing Xiao 006; Xianghua Ye; Dakai Jin (MICCAI (4), 2021)

Weakly-Supervised Universal Lesion Segmentation with Regional Level Set Loss. - Youbao Tang; Jinzheng Cai; Ke Yan 006; Lingyun Huang; Guotong Xie; Jing Xiao 006; Jingjing Lu; Gigin Lin; Le Lu 001 (MICCAI (2), 2021)

Lesion Segmentation and RECIST Diameter Prediction via Click-Driven Attention and Dual-Path Connection. - Youbao Tang; Ke Yan 006; Jinzheng Cai; Lingyun Huang; Guotong Xie; Jing Xiao 006; Jingjing Lu; Gigin Lin; Le Lu 001 (MICCAI (2), 2021)

Effective Pancreatic Cancer Screening on Non-contrast CT Scans via Anatomy-Aware Transformers. - Yingda Xia; Jiawen Yao; Le Lu 001; Lingyun Huang; Guotong Xie; Jing Xiao 006; Alan L. Yuille; Kai Cao; Ling Zhang 002 (MICCAI (5), 2021)

Semi-supervised Learning for Bone Mineral Density Estimation in Hip X-Ray Images. - Kang Zheng; Yirui Wang 002; Xiao-Yun Zhou 001; Fakai Wang; Le Lu 001; Chihung Lin; Lingyun Huang; Guotong Xie; Jing Xiao 006; Chang-Fu Kuo; Shun Miao (MICCAI (5), 2021)

Scalable Semi-supervised Landmark Localization for X-ray Images Using Few-Shot Deep Adaptive Graph. - Xiao-Yun Zhou 001; Bolin Lai; Weijian Li 001; Yirui Wang 002; Kang Zheng; Fakai Wang; Chihung Lin; Le Lu 001; Lingyun Huang; Mei Han; Guotong Xie; Jing Xiao 006; et al. (DGM4MICCAI/DALI@MICCAI, 2021)

Discovering Better Model Architectures for Medical Query Understanding. - Wei Zhu 016; Yuan Ni; Xiaoling Wang 004; Guotong Xie (NAACL-HLT (Industry Papers), 2021)

AutoTrans: Automating Transformer Design via Reinforced Architecture Search. - Wei Zhu 016; Xiaoling Wang 004; Yuan Ni; Guotong Xie (NLPCC (1), 2021)

PASH at TREC 2021 Deep Learning Track: Generative Enhanced Model for Multi-stageRankingtrack: DL. - Yixuan Qiao; Hao Chen; Tuozhen Liu; Xianbin Ye; Jun Wang 123; Peng Gao 015; Guotong Xie (TREC, 2021)

An effective self-supervised framework for learning expressive molecular global representations to drug discovery. - Pengyong Li; Jun Wang 123; Yixuan Qiao; Hao Chen; Yihuan Yu; Xiaojun Yao; Peng Gao 015; Guotong Xie; Sen Song (Briefings Bioinform., 2021)

HFIP: an integrated multi-omics data and knowledge platform for the precision medicine of heart failure. - Jing Wu; Min Zhao; Tao Li; Jinxiu Sun; Qi Chen; Chengliang Yin; Zhilong Jia; Chenghui Zhao; Gui Lin; Yuan Ni; Guotong Xie; Jinlong Shi; et al. (Database J. Biol. Databases Curation, 2021)

Lesion synthesis to improve intracranial hemorrhage detection and classification for CT images. - Guyue Zhang; Kaixing Chen; Shangliang Xu; Po Chuan Cho; Yang Nan 002; Xin Zhou; Chuanfeng Lv; Changsheng Li; Guotong Xie (Comput. Medical Imaging Graph., 2021)

Learning from Subjective Ratings Using Auto-Decoded Deep Latent Embeddings. - Bowen Li; Xinping Ren; Ke Yan 006; Le Lu 001; Guotong Xie; Jing Xiao 006; Dar-In Tai; Adam P. Harrison (CoRR, 2021)

CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark. - Ningyu Zhang 001; Zhen Bi; Xiaozhuan Liang; Lei Li 040; Xiang Chen 016; Shumin Deng; Luoqiu Li; Hongbin Ye; Xin Shang; Kangping Yin; Chuanqi Tan; Jian Xu; et al. (CoRR, 2021)

Winner Team Mia at TextVQA Challenge 2021: Vision-and-Language Representation Learning with Pre-trained Sequence-to-Sequence Model. - Yixuan Qiao; Hao Chen; Jun Wang 123; Yihao Chen; Xianbin Ye; Ziliang Li; Xianbiao Qi; Peng Gao 015; Guotong Xie (CoRR, 2021)

DeepStationing: Thoracic Lymph Node Station Parsing in CT Scans using Anatomical Context Encoding and Key Organ Auto-Search. - Dazhou Guo; Xianghua Ye; Jia Ge; Xing Di; Le Lu 001; Lingyun Huang; Guotong Xie; Jing Xiao 006; Zhongjie Liu; Ling Peng; Senxiang Yan; Dakai Jin (CoRR, 2021)

Multi-institutional Validation of Two-Streamed Deep Learning Method for Automated Delineation of Esophageal Gross Tumor Volume using planning-CT and FDG-PETCT. - Xianghua Ye; Dazhou Guo; Chen-Kan Tseng; Jia Ge; Tsung-Min Hung; Ping-Ching Pai; Yanping Ren; Lu Zheng; Xinli Zhu; Ling Peng; Ying Chen; Xiaohua Chen; et al. (CoRR, 2021)

Pairwise Half-graph Discrimination: A Simple Graph-level Self-supervised Strategy for Pre-training Graph Neural Networks. - Pengyong Li; Jun Wang 123; Ziliang Li; Yixuan Qiao; Xianggen Liu; Fei Ma; Peng Gao 015; Seng Song; Guotong Xie (CoRR, 2021)

Superpixel-Based Building Damage Detection from Post-earthquake Very High Resolution Imagery Using Deep Neural Networks. - Jun Wang 042; Zhoujing Li; Yixuan Qiao; Qiming Qin; Peng Gao 015; Guotong Xie (CoRR, 2021)

Automated vertebral landmarks and spinal curvature estimation using non-directional part affinity fields. - Cheng Zhang; Jun Wang 123; Jian He; Peng Gao 015; Guotong Xie (Neurocomputing, 2021)

An integrated framework for modelling quantitative effects of entry restrictions and travel quarantine on importation risk of COVID-19. - Tiange Chen; Siwan Huang; Guanqiao Li; Yuan Zhang; Ye Li; Jinyi Zhu; Xuanling Shi; Xiang Li 013; Guotong Xie; Linqi Zhang (J. Biomed. Informatics, 2021)

ALeRT-COVID: Attentive Lockdown-awaRe Transfer Learning for Predicting COVID-19 Pandemics in Different Countries. - Yingxue Li; Wenxiao Jia; Junmei Wang; Jianying Guo; Qin Liu; Xiang Li 013; Guotong Xie; Fei Wang 001 (J. Heal. Informatics Res., 2021)

Prediction of Three-Dimensional Radiotherapy Optimal Dose Distributions for Lung Cancer Patients With Asymmetric Network. - Yan Shao; Xiaoying Zhang; Ge Wu; Qingtao Gu; Jiyong Wang; Yanchen Ying; Aihui Feng; Guotong Xie; Qing Kong; Zhiyong Xu 006 (IEEE J. Biomed. Health Informatics, 2021)

A Simple Hash-Based Early Exiting Approach For Language Understanding and Generation. - Tianxiang Sun; Xiangyang Liu; Wei Zhu 016; Zhichao Geng; Lingling Wu; Yilong He; Yuan Ni; Guotong Xie; Xuanjing Huang 001; Xipeng Qiu (ACL (Findings), 2022)

CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark. - Ningyu Zhang 001; Mosha Chen; Zhen Bi; Xiaozhuan Liang; Lei Li 040; Xin Shang; Kangping Yin; Chuanqi Tan; Jian Xu; Fei Huang 002; Luo Si; Yuan Ni; et al. (ACL (1), 2022)

Visual-Semantic Transformer for Scene Text Recognition. - Liang Diao; Xin Tang; Jun Wang 123; Rui Fang; Guotong Xie; Weifu Chen (BMVC, 2022)

Parallel and Robust Text Rectifier for Scene Text Recognition. - Bingcong Li; Xin Tang; Jun Wang 123; Liang Diao; Rui Fang; Guotong Xie; Weifu Chen (BMVC, 2022)

Integrating Medical Code Descriptions and Building Text Classification Models for Diagnostic Decision Support. - Rui Tang; Zhaowei Zhu; Haishen Yao; Yanxuan Li; Xingzhi Sun 002; Gang Hu 001; Guotong Xie; Yichong Li (ICHI, 2022)

SFE-AI at SemEval-2022 Task 11: Low-Resource Named Entity Recognition using Large Pre-trained Language Models. - Changyu Hou; Jun Wang 123; Yixuan Qiao; Peng Jiang; Peng Gao 015; Guotong Xie; Qizhi Lin; Xiaopeng Wang; Xiandi Jiang; Benqi Wang; Qifeng Xiao (SemEval@NAACL, 2022)

HCL: Improving Graph Representation with Hierarchical Contrastive Learning. - Jun Wang 123; Weixun Li; Changyu Hou; Xin Tang; Yixuan Qiao; Rui Fang; Pengyong Li; Peng Gao 015; Guotong Xie (ISWC, 2022)

Autonomous localization and segmentation for body composition quantization on abdominal CT. - Guyue Zhang; Yang Yang 041; Shangliang Xu; Yang Nan 002; Chuanfeng Lv; Lina Wei; Tianwei Qian; Jun Han; Guotong Xie (Biomed. Signal Process. Control., 2022)

CandidateDrug4Cancer: An Open Molecular Graph Learning Benchmark on Drug Discovery for Cancer. - Xianbin Ye; Ziliang Li; Fei Ma; Zongbi Yi; Pengyong Li; Jun Wang 123; Peng Gao 015; Yixuan Qiao; Guotong Xie (CoRR, 2022)

PASH at TREC 2021 Deep Learning Track: Generative Enhanced Model for Multi-stage Ranking. - Yixuan Qiao; Hao Chen; Yongquan Lai; Jun Wang 123; Tuozhen Liu; Xianbin Ye; Rui Fang; Peng Gao 015; Wenfeng Xie; Guotong Xie (CoRR, 2022)

Automatic fine-grained glomerular lesion recognition in kidney pathology. - Yang Nan 002; Fengyi Li; Peng Tang; Guyue Zhang; Caihong Zeng; Guotong Xie; Zhihong Liu; Guang Yang 006 (Pattern Recognit., 2022)

Unified Demonstration Retriever for In-Context Learning. - Xiaonan Li; Kai Lv 001; Hang Yan 001; Tianyang Lin; Wei Zhu 016; Yuan Ni; Guotong Xie; Xiaoling Wang 004; Xipeng Qiu (ACL (1), 2023)

BADGE: Speeding Up BERT Inference after Deployment via Block-wise Bypasses and Divergence-based Early Exiting. - Wei Zhu 016; Peng Wang; Yuan Ni; Guotong Xie; Xiaoling Wang 004 (ACL (industry), 2023)

Global Balanced Text Classification for Stable Disease Diagnosis. - Zhuoyang Xu; Xuehan Jiang; Siyue Chen; Yue Zhao; Gang Hu 001; Xingzhi Sun 002; Guotong Xie (ADMA (3), 2023)

GRMI: Graph Representation Learning of Multimodal Data with Incompleteness. - Xian Xu; Xiao Xu; Xiang Li 013; Guotong Xie (DASFAA (3), 2023)

Exploring the Impact of Model Scaling on Parameter-Efficient Tuning. - Yusheng Su; Chi-Min Chan; Jiali Cheng; Yujia Qin; Yankai Lin; Shengding Hu; Zonghan Yang; Ning Ding 002; Xingzhi Sun 002; Guotong Xie; Zhiyuan Liu 001; Maosong Sun 001 (EMNLP, 2023)

Filter Pruning Via Filters Similarity in Consecutive Layers. - Xiaorui Wang; Jun Wang 123; Xin Tang; Peng Gao 015; Rui Fang; Guotong Xie (ICASSP, 2023)

ACF: Aligned Contrastive Finetuning For Language and Vision Tasks. - Wei Zhu 016; Peng Wang; Xiaoling Wang 004; Yuan Ni; Guotong Xie (ICASSP, 2023)

Predicting the trend and outbreak of influenza A using machine learning algorithms in Shenzhen, China. - Lan Wei; Ye Li; Jianying Guo; Xiang Li 013; Shujiang Mei; Yongsheng Wu; Guotong Xie; Tiejian Feng (ISAIMS, 2023)

Interactive Molecular Discovery with Natural Language. - Zheni Zeng; Bangchen Yin; Shipeng Wang; Jiarui Liu; Cheng Yang 002; Haishen Yao; Xingzhi Sun 002; Maosong Sun 001; Guotong Xie; Zhiyuan Liu 001 (CoRR, 2023)

UltraFeedback: Boosting Language Models with High-quality Feedback. - Ganqu Cui; Lifan Yuan; Ning Ding 002; Guanming Yao; Wei Zhu 016; Yuan Ni; Guotong Xie; Zhiyuan Liu 001; Maosong Sun 001 (CoRR, 2023)

Improving drug-target affinity prediction via feature fusion and knowledge distillation. - Ruiqiang Lu; Jun Wang 123; Pengyong Li; Yuquan Li; Shuoyan Tan; Yiting Pan; Huanxiang Liu; Peng Gao 015; Guotong Xie; Xiaojun Yao (Briefings Bioinform., 2023)

Multi-task entity linking with supervision from a taxonomy. - Xuwu Wang; Lihan Chen; Wei Zhu 016; Yuan Ni; Guotong Xie; Deqing Yang; Yanghua Xiao (Knowl. Inf. Syst., 2023)

IAPT: Instance-Aware Prompt Tuning for Large Language Models. - Wei Zhu 016; Aaron Xuxiang Tian; Congrui Yin; Yuan Ni; Xiaoling Wang 004; Guotong Xie (ACL (1), 2024)

ULTRAFEEDBACK: Boosting Language Models with Scaled AI Feedback. - Ganqu Cui; Lifan Yuan; Ning Ding 002; Guanming Yao; Bingxiang He; Wei Zhu 016; Yuan Ni; Guotong Xie; Ruobing Xie; Yankai Lin; Zhiyuan Liu 001; Maosong Sun 001 (ICML, 2024)

Text2MDT: Extracting Medical Decision Trees from Medical Texts. - Wei Zhu 016; Wenfeng Li; Xing Tian; Pengfei Wang; Xiaoling Wang 004; Jin Chen 004; Yuanbin Wu; Yuan Ni; Guotong Xie (CoRR, 2024)

IAPT: Instruction-Aware Prompt Tuning for Large Language Models. - Wei Zhu 016; Aaron Xuxiang Tian; Congrui Yin; Yuan Ni; Xiaoling Wang 004; Guotong Xie (CoRR, 2024)

Hierarchical visual-semantic interaction for scene text recognition. - Liang Diao; Xin Tang; Jun Wang 123; Guotong Xie; Junlin Hu 001 (Inf. Fusion, 2024)