Benchmarking CRISPR on-target sgRNA design. - Jifang Yan; Guohui Chuai; Chi Zhou 003; Chen-Yu Zhu; Jing Yang; Chao Zhang; Feng Gu; Han Xu; Jia Wei; Qi Liu 019 (Briefings Bioinform., 2018)

Data imbalance in CRISPR off-target prediction. - Yuli Gao; Guohui Chuai; Weichuan Yu; Shen Qu; Qi Liu 019 (Briefings Bioinform., 2020)

FL-QSAR: a federated learning-based QSAR prototype for collaborative drug discovery. - Shaoqi Chen; Dongyu Xue; Guohui Chuai; Qiang Yang 001; Qi Liu 019 (Bioinform., 2021)

Systematic Exploration of Optimized Base Editing gRNA Design and Pleiotropic Effects with BExplorer. - Gongchen Zhang; Chenyu Zhu; Xiaohan Chen; Jifang Yan; Dongyu Xue; Zixuan Wei; Guohui Chuai; Qi Liu 019 (Genom. Proteom. Bioinform., 2023)

Pan-Peptide Meta Learning for T-cell receptor-antigen binding recognition. - Yicheng Gao; Yuli Gao; Yuxiao Fan; Chengyu Zhu; Zhiting Wei; Chi Zhou 003; Guohui Chuai; Qinchang Chen; He Zhang; Qi Liu 019 (Nat. Mac. Intell., 2023)

Genomics-Guided Representation Learning for Pathologic Pan-Cancer Tumor Microenvironment Subtype Prediction. - Fangliangzi Meng; Hongrun Zhang; Ruodan Yan; Guohui Chuai; Chao Li 031; Qi Liu (MICCAI (3), 2024)

Genomics-guided Representation Learning for Pathologic Pan-cancer Tumor Microenvironment Subtype Prediction. - Fangliangzi Meng; Hongrun Zhang; Ruodan Yan; Guohui Chuai; Chao Li; Qi Liu (CoRR, 2024)

Toward subtask-decomposition-based learning and benchmarking for predicting genetic perturbation outcomes and beyond. - Yicheng Gao; Zhiting Wei; Kejing Dong; Ke Chen; Jingya Yang; Guohui Chuai; Qi Liu 019 (Nat. Comput. Sci., 2024)

PrimeNet: rational design of Prime editing pegRNAs by deep learning. - Xichen Liao; Qi Liu 019; Guohui Chuai (Briefings Bioinform., 2025)