Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families. - Guohui Ding 001; Jiuhong Kang; Qi Liu 024; Tieliu Shi; Gang Pei; Yixue Li (PLoS Comput. Biol., 2006)

InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. - Jingchun Sun; Yan Sun; Guohui Ding 001; Qi Liu 024; Chuan Wang; Youyu He; Tieliu Shi; Yixue Li; Zhongming Zhao (BMC Bioinform., 2007)

Modular co-evolution of metabolic networks. - Jing Zhao 003; Guo-Hui Ding 001; Lin Tao; Hong Yu; Zhong-Hao Yu; Jianhua Luo; Zhi-Wei Cao; Yi-Xue Li (BMC Bioinform., 2007)

EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. - Guohui Ding 001; Yan Sun; Hong Li 013; Zhen Wang; Haiwei Fan; Chuan Wang; Dan Yang; Yixue Li (Nucleic Acids Res., 2008)

CHSMiner: a GUI tool to identify chromosomal homologous segments. - Zhen Wang; Guohui Ding 001; Zhong-Hao Yu; Lei Liu; Yixue Li (Algorithms Mol. Biol., 2009)

PAnnBuilder: an R package for assembling proteomic annotation data. - Hong Li 013; Guohui Ding 001; Lu Xie; Yixue Li (Bioinform., 2009)

GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction. - Yao Yu; Kang Tu; Siyuan Zheng; Yun Li; Guohui Ding 001; Jie Ping; Pei Hao; Yixue Li (BMC Bioinform., 2009)

SysZNF: the C2H2 zinc finger gene database. - Guohui Ding 001; Peter Lorenz; Michael Kreutzer; Yixue Li; Hans-Jürgen Thiesen (Nucleic Acids Res., 2009)

SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. - Hong Xi; Jongsun Park 002; Guohui Ding 001; Yong-Hwan Lee; Yixue Li (Nucleic Acids Res., 2009)

Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma. - Tao Huang 004; Guohui Ding 001; Yixue Li; Lei Liu; Eugene Tan; Hongyue Dai; Qi Liu 024; Zhidong Tu; Lu Xie (BCB, 2010)

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information. - Qi Liu 024; Yejun Tan; Tao Huang 004; Guohui Ding 001; Zhidong Tu; Lei Liu; Yixue Li; Hongyue Dai; Lu Xie (BMC Bioinform., 2010)

dbDEPC: a database of Differentially Expressed Proteins in human Cancers. - Hong Li 013; Ying He; Guohui Ding 001; Chuan Wang; Lu Xie; Yixue Li (Nucleic Acids Res., 2010)

A new strategy for better genome assembly from very short reads. - Yan Ji; Yixiang Shi; Guohui Ding 001; Yixue Li (BMC Bioinform., 2011)

The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma. - Tao Huang 004; Lei Liu; Qi Liu 024; Guohui Ding 001; Yejun Tan; Zhidong Tu; Yixue Li; Hongyue Dai; Lu Xie (Int. J. Comput. Biol. Drug Des., 2011)

The 3DGD: a database of genome 3D structure. - Chao Li; Xiao Dong; Haiwei Fan; Chuan Wang; Guohui Ding 001; Yixue Li (Bioinform., 2014)

Virtualisation of gene knockout experiments based on kinetic modelling: Escherichia coli as an algorithmic case. - Ru-Dong Li; Guohui Ding 001; Yixue Li (Int. J. Comput. Biol. Drug Des., 2017)