A novel networked traffic parameter forecasting method based on Markov chain model. - Jianming Hu; Jingyan Song; Guoqiang Yu; Yi Zhang 029 (SMC, 2003)

Bayesian Network Methods for Traffic Flow Forecasting with Incomplete Data. - Shiliang Sun; Changshui Zhang; Guoqiang Yu; Naijiang Lu; Fei Xiao (ECML, 2004)

Switching ARIMA model based forecasting for traffic flow. - Guoqiang Yu; Changshui Zhang (ICASSP (2), 2004)

Short-Term Traffic Flow Forecasting Using Expanded Bayesian Network for Incomplete Data. - Changshui Zhang; Shiliang Sun; Guoqiang Yu (ISNN (2), 2004)

Total Variation Based Iterative Image Reconstruction. - Guoqiang Yu; Liang Li; Jianwei Gu; Li Zhang 050 (CVBIA, 2005)

Combining Iterative Inverse Filter with Shock Filter for Baggage Inspection Image Deblurring. - Guoqiang Yu; Jin Zhang; Li Zhang 050; Zhiqiang Chen; Yuanjing Li (ACCV (2), 2006)

Metal artifacts reduction in CT images through Euler's elastica and curvature based sinogram inpainting. - Jianwei Gu; Li Zhang 050; Guoqiang Yu; Yuxiang Xing; Zhiqiang Chen (Image Processing, 2006)

A bayesian network approach to traffic flow forecasting. - Shiliang Sun; Changshui Zhang; Guoqiang Yu (IEEE Trans. Intell. Transp. Syst., 2006)

Analyzing DNA Copy Number Changes Using Fused Margin Regression. - Yuanjian Feng; Guoqiang Yu; Tian-Li Wang; Ie-Ming Shih; Yue Joseph Wang (BIBM, 2009)

Accurate Estimation of Genomic Deletions and Normal Cell Contamination by Bayesian Analysis of Mixtures. - Guoqiang Yu; Bai Zhang; Jianfeng Xu; Ie-Ming Shih; Yue Joseph Wang (BIBM, 2009)

An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions. - David J. Miller 001; Yanxin Zhang; Guoqiang Yu; Yongmei Liu 003; Li Chen 018; Carl D. Langefeld; David M. Herrington; Yue Joseph Wang (Bioinform., 2009)

Analysing DNA copy number changes using Fused Margin Regression. - Yuanjian Feng; Guoqiang Yu; Tian-Li Wang; Ie-Ming Shih; Yue Joseph Wang (Int. J. Funct. Informatics Pers. Medicine, 2010)

Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases. - Guoqiang Yu; Yuanjian Feng; David J. Miller 001; Jianhua Xuan; Eric P. Hoffman; Robert Clarke; Ben Davidson; Ie-Ming Shih; Yue Joseph Wang (J. Mach. Learn. Res., 2010)

PUGSVM: a caBIGTM analytical tool for multiclass gene selection and predictive classification. - Guoqiang Yu; Huai Li; Sook Shin Ha; Ie-Ming Shih; Robert Clarke; Eric P. Hoffman; Subha Madhavan; Jianhua Xuan; Yue Joseph Wang (Bioinform., 2011)

BACOM: in silico detection of genomic deletion types and correction of normal cell contamination in copy number data. - Guoqiang Yu; Bai Zhang; G. Steven Bova; Jianfeng Xu; Ie-Ming Shih; Yue Joseph Wang (Bioinform., 2011)

Machine Learning to Interrogate High-throughput Genomic Data: Theory and Applications. - Guoqiang Yu (2011)

A non-parametric approach for estimating stromal contamination in cancer samples. - Mohammed Elhenawy; Xuchu Hou; Guoqiang Yu (GENSiPS, 2012)

NMF based approach for finding recurrent aberrations in DNA copy number data. - Mohammed Elhenawy; Guoqiang Yu (GENSiPS, 2012)

Accurate identification of significant aberrations in contaminated cancer genome. - Xuchu Hou; Guoqiang Yu; Xiguo Yuan; Bai Zhang; Ie-Ming Shih; Zhen Zhang; Robert Clarke; Subha Madhavan (GENSiPS, 2012)

Noninvasive optical evaluation of spontaneous low frequency oscillations in cerebral hemodynamics. - Ran Cheng; Yu Shang; Don Hayes Jr.; Sibu P. Saha; Guoqiang Yu (NeuroImage, 2012)

GPA: An algorithm for LC/MS based glycan profile annotation. - Minkun Wang; Guoqiang Yu; Yehia Mechref; Habtom W. Ressom (BIBM, 2013)

Reconstructing biological networks using low order partial correlation. - Yiming Zuo 002; Guoqiang Yu; Mahlet G. Tadesse; Habtom W. Ressom (BIBM, 2013)

Simultaneously Extracting Multiple Parameters via Fitting One Single Autocorrelation Function Curve in Diffuse Correlation Spectroscopy. - Lixin Dong; Lian He; Yu Lin; Yu Shang; Guoqiang Yu (IEEE Trans. Biomed. Eng., 2013)

A new approach for multi-omic data integration. - Yiming Zuo 002; Guoqiang Yu; Chi Zhang; Habtom W. Ressom (BIBM, 2014)

Enhancing the convex analysis of mixtures technique for estimating DCE-MRI pharmacokinetic parameters. - Ibrahim Mohamed Ibrahim; Guoqiang Yu; Li Chen 018; Yue Wang 021 (EMBC, 2014)

A statistical approach to identifying significant transgenerational methylation changes. - Ye Tian; Bai Zhang; Yi Fu; Guoqiang Yu; Yue Wang 021 (GlobalSIP, 2014)

Predicting age at loss of ambulation in Duchenne muscular dystrophy with deep phenotypic measures. - Yinxue Wang; Luca Bello; Yue Wang 021; Craig M. McDonald; Eric P. Hoffman; Guoqiang Yu (GlobalSIP, 2014)

A feasible roadmap to identifying significant intercellular genomic heterogeneity in deep sequencing data. - Guoqiang Yu; Niya Wang; Roger R. Wang; Sean S. Wang; Yue Wang 021 (GlobalSIP, 2014)

AISAIC: a software suite for accurate identification of significant aberrations in cancers. - Bai Zhang; Xuchu Hou; Xiguo Yuan; Ie-Ming Shih; Zhen Zhang; Robert Clarke; Roger R. Wang; Yi Fu; Subha Madhavan; Yue Joseph Wang; Guoqiang Yu (Bioinform., 2014)

Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses. - Ye Tian; Sean S. Wang; Zhen Zhang; Olga C. Rodriguez; Emanuel Petricoin III; Ie-Ming Shih; Daniel Chan; Maria Avantaggiati; Guoqiang Yu; Shaozhen Ye; Robert Clarke; Chao Wang 005; et al. (IEEE ACM Trans. Comput. Biol. Bioinform., 2014)

Purification of LC/GC-MS based biomolecular expression profiles using a topic model. - Minkun Wang; Tsung-Heng Tsai; Guoqiang Yu; Habtom W. Ressom (BIBM, 2015)

Integrating prior biological knowledge and graphical LASSO for network inference. - Yiming Zuo 002; Guoqiang Yu; Habtom W. Ressom (BIBM, 2015)

Integrative analysis of LC-MS based glycomic and proteomic data. - Minkun Wang; Guoqiang Yu; Habtom W. Ressom (EMBC, 2015)

Metabolomic data deconvolution using probabilistic purification models. - Minkun Wang; Cristina Di Poto; Alessia Ferrarini; Guoqiang Yu; Habtom W. Ressom (BIBM, 2016)

FASP: A machine learning approach to functional astrocyte phenotyping from time-lapse calcium imaging data. - Yinxue Wang; Guilai Shi; David J. Miller 001; Yizhi Wang; Gerard Broussard; Yue Wang 021; Lin Tian; Guoqiang Yu (ISBI, 2016)

Graphical Time Warping for Joint Alignment of Multiple Curves. - Yizhi Wang; David J. Miller 001; Kira Poskanzer; Yue Wang 021; Lin Tian; Guoqiang Yu (NIPS, 2016)

Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants. - Ibrahim Youssef; Robert Clarke; Ie-Ming Shih; Yue Joseph Wang; Guoqiang Yu (Comput. Biol. Medicine, 2016)

Electric-Field Control of Spin-Orbit Interaction for Low-Power Spintronics. - Kang L. Wang; Xufeng Kou; Pramey Upadhyaya; Yabin Fan; Qiming Shao; Guoqiang Yu; Pedram Khalili Amiri (Proc. IEEE, 2016)

Integrative Analysis of Proteomic, Glycomic, and Metabolomic Data for Biomarker Discovery. - Minkun Wang; Guoqiang Yu; Habtom W. Ressom (IEEE J. Biomed. Health Informatics, 2016)

Trial measurement of movement-related cortical dynamics using electroencephalography and diffuse correlation spectroscopy. - Chase Haddix; Ahmed A. Bahrani; Aleksandra Kawala-Janik; Walter G. Besio; Guoqiang Yu; Sridhar Sunderam (MMAR, 2017)

Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO. - Yiming Zuo 002; Yi Cui; Guoqiang Yu; Ruijiang Li; Habtom W. Ressom (BMC Bioinform., 2017)

Automated Functional Analysis of Astrocytes from Chronic Time-Lapse Calcium Imaging Data. - Yinxue Wang; Guilai Shi; David J. Miller 001; Yizhi Wang; Congchao Wang; Gerard Broussard; Yue Wang 021; Lin Tian; Guoqiang Yu (Frontiers Neuroinformatics, 2017)

Noncontact 3-D Speckle Contrast Diffuse Correlation Tomography of Tissue Blood Flow Distribution. - Chong Huang 003; Daniel Irwin; Mingjun Zhao; Yu Shang; Nneamaka Agochukwu; Lesley Wong; Guoqiang Yu (IEEE Trans. Medical Imaging, 2017)

Large Room Temperature Charge-to-Spin Conversion Efficiency in Topological Insulator/CoFeB bilayers. - Qiming Shao; Guoqiang Yu; Lei Pan; Xiaoyu Che; Yabin Fan; Koichi Murata; Qing-Lin He; Tianxiao Nie; Xufeng Kou; Kang L. Wang (DRC, 2018)

Detection and tracking of migrating oligodendrocyte progenitor cells from in vivo fluorescence time-lapse imaging data. - Yinxue Wang; Maria Ali; Yue Joseph Wang; Sarah Kucenas; Guoqiang Yu (ISBI, 2018)

Noninvasive Noncontact 3D Optical Imaging of Blood Flow Distributions in Animals and Humans. - Siavash Mazdeyasna; Chong Huang 003; Mingjun Zhao; Alisha R. Bonaroti; Kathryn Saatman; Lei Chen; Elie G. Abu Jawdeh; Henrietta S. Bada; Brandon A. Miller; Lesley Wong; Guoqiang Yu (ISSPIT, 2018)

muSSP: Efficient Min-cost Flow Algorithm for Multi-object Tracking. - Congchao Wang; Yizhi Wang; Yinxue Wang; Chiung-Ting Wu; Guoqiang Yu (NeurIPS, 2019)

DBS: a fast and informative segmentation algorithm for DNA copy number analysis. - Jun Ruan; Zhen Liu; Ming Sun; Yue Wang 021; Junqiu Yue; Guoqiang Yu (BMC Bioinform., 2019)

Efficient Global Multi-object Tracking Under Minimum-cost Circulation Framework. - Congchao Wang; Yizhi Wang; Guoqiang Yu (CoRR, 2019)

Noninvasive noncontact speckle contrast diffuse correlation tomography of cerebral blood flow in rats. - Chong Huang 003; Siavash Mazdeyasna; Li Chen; Elie G. Abu Jawdeh; Henrietta S. Bada; Kathryn Saatman; Lei Chen; Guoqiang Yu (NeuroImage, 2019)

SynQuant: an automatic tool to quantify synapses from microscopy images. - Yizhi Wang; Congchao Wang; Petter Ranefall; Gerard Broussard; Yinxue Wang; Guilai Shi; Boyu Lyu; Chiung-Ting Wu; Yue Wang 021; Lin Tian; Guoqiang Yu (Bioinform., 2020)

Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection. - Chiung-Ting Wu; Yizhi Wang; Yinxue Wang; Timothy M. D. Ebbels; Ibrahim Karaman; Gonçalo Graça; Rui Pinto; David M. Herrington; Yue Wang 021; Guoqiang Yu (Bioinform., 2020)

ConvexVST: A Convex Optimization Approach to Variance-stabilizing Transformation. - Mengfan Wang; Boyu Lyu; Guoqiang Yu (ICML, 2021)

A Single-Cell-Resolution Quantitative Metric of Similarity to a Target Cell Type for scRNA-seq Data. - Zuolin Cheng; Songtao Wei; Guoqiang Yu (BIBM, 2022)

An Unsupervised Approach to Detect Microglia Tip in Volumetric Fluorescence Imaging Data. - Mengfan Wang; Kathleen Whiting; Fritz W. Lischka; Zygmunt Galdzicki; Guoqiang Yu (ISBI, 2022)

BILCO: An Efficient Algorithm for Joint Alignment of Time Series. - Xuelong Mi; Mengfan Wang; Alex Bo-Yuan Chen; Jing-Xuan Lim; Yizhi Wang; Misha B. Ahrens; Guoqiang Yu (NeurIPS, 2022)

Implementation of Highly Reliable and Energy-Efficient Nonvolatile In-Memory Computing using Multistate Domain Wall Spin-Orbit Torque Device. - Huai Lin; Nuo Xu; Di Wang; Long Liu; Xuefeng Zhao; Yongjian Zhou; Xuming Luo; Cheng Song; Guoqiang Yu; Guozhong Xing (Adv. Intell. Syst., 2022)

Implementation of Highly Reliable and Energy-Efficient Nonvolatile In-Memory Computing using Multistate Domain Wall Spin-Orbit Torque Device. - Huai Lin; Nuo Xu; Di Wang 042; Long Liu; Xuefeng Zhao; Yongjian Zhou; Xuming Luo; Cheng Song; Guoqiang Yu; Guozhong Xing (Adv. Intell. Syst., 2022)

swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution. - Lulu Chen; Chiung-Ting Wu; Chia-Hsiang Lin; Rujia Dai; Chunyu Liu 001; Robert Clarke; Guoqiang Yu; Jennifer E. Van Eyk; David M. Herrington; Yue Wang 021 (Bioinform., 2022)

Cryogenic in-memory computing using tunable chiral edge states. - Yuting Liu; Albert Lee; Kun Qian; Peng Zhang; Haoran He; Zheyu Ren; Shun Kong Cheung; Yaoyin Li; Xu Zhang; Zichao Ma; Zhihua Xiao; Guoqiang Yu; et al. (CoRR, 2022)

Efficient Global MOT Under Minimum-Cost Circulation Framework. - Congchao Wang; Yizhi Wang; Guoqiang Yu (IEEE Trans. Pattern Anal. Mach. Intell., 2022)

Improving Nighttime Semantic Segmentation with Dual-Domain Mixed Attention and Shallow Feature Enhancement. - Guoqiang Yu; Xudong Zhou (CCIS, 2023)

NIS3D: A Completely Annotated Benchmark for Dense 3D Nuclei Image Segmentation. - Wei Zheng; James Cheng Peng; Zeyuan Hou; Boyu Lyu; Mengfan Wang; Xuelong Mi; Shuoxuan Qiao; Yinan Wan; Guoqiang Yu (NeurIPS, 2023)

Latent Diffusion Model for Medical Image Standardization and Enhancement. - Md. Selim; Jie Zhang; Faraneh Fathi; Michael A. Brooks; Ge Wang; Guoqiang Yu; Jin Chen (CoRR, 2023)

A Wearable Fiber-Free Optical Sensor for Continuous Monitoring of Cerebral Blood Flow in Freely Behaving Mice. - Xuhui Liu; Daniel A. Irwin; Chong Huang 003; Yutong Gu; Li Chen; Kevin D. Donohue; Lei Chen; Guoqiang Yu (IEEE Trans. Biomed. Eng., 2023)

Joint Thresholding: An Adaptive Thresholding Approach Considering The Consistency of High-Dimensional Fluorescence Imaging Data. - Mengfan Wang; Guoqiang Yu (ISBI, 2024)

Princut-Auto: An Unsupervised 3D Cell Detection Tool for Embryonic Data. - Wei Zheng; Boyu Lyu; Xuelong Mi; James Cheng Peng; Yizhi Wang; Mengfan Wang; Zuolin Cheng; Shuoxuan Qiao; Zeyuan Hou; Guoqiang Yu (ISBI, 2024)

CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution. - Chiung-Ting Wu; Dongping Du; Lulu Chen; Rujia Dai; Chunyu Liu 001; Guoqiang Yu; Saurabh Bhardwaj; Sarah J. Parker; Zhen Zhang; Robert Clarke; David M. Herrington; Yue Wang 021 (Bioinform., 2024)

Engineering-Oriented Design of Drift-Resilient MTJ Random Number Generator via Hybrid Control Strategies. - Ran Zhang; Caihua Wan; Yingqian Xu; Xiaohan Li; Raik Hoffmann; Meike Hindenberg; Shiqiang Liu; Dehao Kong; Shilong Xiong; Shikun He; Alptekin Vardar; Qiang Dai; et al. (CoRR, 2025)

Time-Resolved Laser Speckle Contrast Imaging (TR-LSCI) of Cerebral Blood Flow. - Faraneh Fathi; Siavash Mazdeyasna; Dara Singh; Chong Huang 003; Mehrana Mohtasebi; Xuhui Liu; Samaneh Rabienia Haratbar; Mingjun Zhao; Li Chen; Arin Can Ulku; Paul Mos; Claudio Bruschini; et al. (IEEE Trans. Medical Imaging, 2025)

Bayesian Reasoning Enabled by Spin-Orbit Torque Magnetic Tunnel Junctions. - Yingqian Xu; Xiaohan Li; Caihua Wan; Ran Zhang; Bin He; Shiqiang Liu; Jihao Xia; Dehao Kong; Shilong Xiong; Guoqiang Yu; Xiufeng Han (CoRR, 2025)