Chinese Internet AS-level Topology - Shi Zhou; Guo-Qiang Zhang 004; Guoqing Zhang 006 (CoRR, 2005)

Operon prediction based on SVM. - Guoqing Zhang 006; Zhi-Wei Cao; Qingming Luo; Yu-Dong Cai 001; Yixue Li (Comput. Biol. Chem., 2006)

GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations. - Qingwei Xu; Yixiang Shi; Qiang Lu; Guoqing Zhang 006; Qingming Luo; Yixue Li (BMC Bioinform., 2008)

DBH2H: vertebrate head-to-head gene pairs annotated at genomic and post-genomic levels. - Hui Yu 014; Fudong Yu; Guoqing Zhang 006; Xiang Shen; Yun-Qin Chen; Yuan-Yuan Li; Yi-Xue Li (Database J. Biol. Databases Curation, 2009)

A universal assortativity measure for network analysis - Guoqing Zhang 006; Suqi Cheng; Guo-Qiang Zhang 004 (CoRR, 2012)

dbDEPC 2.0: updated database of differentially expressed proteins in human cancers. - Ying He; Menghuan Zhang; Yuanhu Ju; Zhong-Hao Yu; Daqing Lv; Han Sun; Weilan Yuan; Fei He; Jianshe Zhang; Hong Li 013; Jing Li; Rui Wang-Sattler; et al. (Nucleic Acids Res., 2012)

SysPTM 2.0: an updated systematic resource for post-translational modification. - Jing Li; Jia Jia 002; Hong Li 013; Jian Yu; Han Sun; Ying He; Daqing Lv; Xiaojuan Yang; Michael O. Glocker; Liang-Xiao Ma; Jiabei Yang; Ling Li; et al. (Database J. Biol. Databases Curation, 2014)

The optimization of running time for a maximum common substructure-based algorithm and its application in drug design. - Jian Chen; Jia Sheng; Dijing Lv; Yang Zhong; Guoqing Zhang 006; Peng Nan (Comput. Biol. Chem., 2014)

Web Resources for Pharmacogenomics. - Guoqing Zhang 006; Yunsheng Zhang; Yunchao Ling; Jia Jia 002 (Genom. Proteom. Bioinform., 2015)

Knowledge Graph Embedding by Bias Vectors. - Minjie Ding; Weiqin Tong; Xuehai Ding; Xiaoli Zhi; Xiao Wang 023; Guoqing Zhang 006 (ICTAI, 2019)

A New Method for Complex Triplet Extraction of Biomedical Texts. - Xiao Wang 023; Qing Li 011; Xuehai Ding; Guoqing Zhang 006; Linhong Weng; Minjie Ding (KSEM (2), 2019)

iProX: an integrated proteome resource. - Jie Ma; Tao Chen 005; Songfeng Wu; Chunyuan Yang; Mingze Bai; Kunxian Shu; Kenli Li 001; Guoqing Zhang 006; Zhong Jin; Fuchu He; Henning Hermjakob; Yunping Zhu (Nucleic Acids Res., 2019)

GTDB: an integrated resource for glycosyltransferase sequences and annotations. - Chenfen Zhou; Qingwei Xu; Sheng He; Wei Ye; Ruifang Cao; Pengyu Wang; Yunchao Ling; Xing Yan; Qingzhong Wang; Guoqing Zhang 006 (Database J. Biol. Databases Curation, 2020)

EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI. - Shijie C. Zheng; Charles E. Breeze; Stephan Beck 002; Danyue Dong; Tianyu Zhu; Liang-Xiao Ma; Wei Ye; Guoqing Zhang 006; Andrew E. Teschendorff (Bioinform., 2020)

PGG.Han: the Han Chinese genome database and analysis platform. - Yang Gao; Chao Zhang; Liyun Yuan; Yunchao Ling; Xiaoji Wang; Chang Liu 082; Yuwen Pan; Xiaoxi Zhang; Xixian Ma; Yuchen Wang; Yan Lu; Kai Yuan; et al. (Nucleic Acids Res., 2020)

PhenoModifier: a genetic modifier database for elucidating the genetic basis of human phenotypic variation. - Hong Sun; Yangfan Guo; Xiaoping Lan; Jia Jia 002; Xiaoshu Cai; Guoqing Zhang 006; Jingjing Xie; Qian Liang; Yixue Li; Guangjun Yu (Nucleic Acids Res., 2020)

Dr AFC: drug repositioning through anti-fibrosis characteristic. - Dingfeng Wu; Wenxing Gao; Xiaoyi Li; Chuan Tian; Na Jiao; Sa Fang; Jing Xiao; Zhifeng Xu; Lixin Zhu; Guoqing Zhang 006; Ruixin Zhu (Briefings Bioinform., 2021)

A Novel Method of Chinese Electronic Medical Records Entity Labeling Based on BIC model. - Yifan Wang; Guowei Teng; Xuehai Ding; Guoqing Zhang 006; Yunchao Ling; Guozhong Wang (J. Softw., 2021)

TransCirc: an interactive database for translatable circular RNAs based on multi-omics evidence. - Wendi Huang; Yunchao Ling; Sirui Zhang; Qiguang Xia; Ruifang Cao; Xiaojuan Fan; Zhaoyuan Fang; Zefeng Wang; Guoqing Zhang 006 (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2. - Dalang Yu; Xiao Yang; Bixia Tang; Yi-Hsuan Pan; Jianing Yang; Guangya Duan; Junwei Zhu; Zi-Qian Hao; Hailong Mu; Long Dai; Wangjie Hu; Mochen Zhang; et al. (Briefings Bioinform., 2022)

dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms. - Feng Xu; Yifan Wang; Yunchao Ling; Chenfen Zhou; Haizhou Wang; Andrew E. Teschendorff; Yi Zhao 013; Haitao Zhao; Yungang He; Guoqing Zhang 006; Zhen Yang 030 (Genom. Proteom. Bioinform., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

Deep learning-based large-scale named entity recognition for anatomical region of mammalian brain. - Xiaokang Chai; Yachao Di; Zhao Feng; Yue Guan 001; Guoqing Zhang 006; Anan Li; Qingming Luo (Quant. Biol., 2022)

A dual-channel deep learning approach to continuous prediction of acute kidney injury in the intensive care unit. - Xuetong Kong; Peng Zhang 047; Yunchao Ling; Daqing Lv; Jun Xu; Guoqing Zhang 006 (BIBM, 2023)

A domain adaptive pre-training language model for sentence classification of Chinese electronic medical record. - Yilin Zou; Peng Zhang 047; Yunchao Ling; Daqing Lv; Ziming Li; Shun Lu 003; Guoqing Zhang 006 (BIBM, 2023)

PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform. - Yimin Wang; Yunchao Ling; Jiao Gong; Xiaohan Zhao; Hanwen Zhou; Bo Xie; Haiyi Lou; Xinhao Zhuang; Li Jin 002; Shaohua Fan; Guoqing Zhang 006; Shuhua Xu (Nucleic Acids Res., 2023)

A cell marker-based clustering strategy (cmCluster) for precise cell type identification of scRNA-seq data. - Yuwei Huang; Huidan Chang; Xiaoyi Chen; Jiayue Meng; Mengyao Han; Tao Huang; Liyun Yuan; Guoqing Zhang 006 (Quant. Biol., 2023)

SMDB: a Spatial Multimodal Data Browser. - Ruifang Cao; Yunchao Ling; Jiayue Meng; Ao Jiang; Ruijin Luo; Qinwen He; Anan Li; Yujie Chen; Zoutao Zhang; Feng Liu; Yixue Li; Guoqing Zhang 006 (Nucleic Acids Res., 2023)

CyclicPepedia: a knowledge base of natural and synthetic cyclic peptides. - Lei Liu 033; Liu Yang; Suqi Cao; Zhigang Gao; Bin Yang; Guoqing Zhang 006; Ruixin Zhu; Dingfeng Wu (Briefings Bioinform., 2024)

NAFLDkb: A Knowledge Base and Platform for Drug Development against Nonalcoholic Fatty Liver Disease. - Tingjun Xu; Wenxing Gao; Lixin Zhu; Wanning Chen; Chaoqun Niu; Wenjing Yin; Liangxiao Ma; Xinyue Zhu; Yunchao Ling; Sheng Gao; Lei Liu 033; Na Jiao; et al. (J. Chem. Inf. Model., 2024)

CPMKG: a condition-based knowledge graph for precision medicine. - Jiaxin Yang; Xinhao Zhuang; Zhenqi Li; Gang Xiong; Ping Xu; Yunchao Ling; Guoqing Zhang 006 (Database J. Biol. Databases Curation, 2024)