Do all economies grow equally fast? - Yaniv Dover; Sonia Moulet; Sorin Solomon; Gur Yaari (Risk Decis. Anal., 2009)

Intermittency and Localization. - Gur Yaari; Dietrich Stauffer; Sorin Solomon (Encyclopedia of Complexity and Systems Science, 2009)

Optimizing Metapopulation Sustainability through a Checkerboard Strategy. - Yossi Ben Zion; Gur Yaari; Nadav M. Shnerb (PLoS Comput. Biol., 2010)

Detecting selection in immunoglobulin sequences. - Mohamed Uduman; Gur Yaari; Uri Hershberg; Jacob A. Stern; Mark J. Shlomchik; Steven H. Kleinstein (Nucleic Acids Res., 2011)

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires. - Jason A. Vander Heiden; Gur Yaari; Mohamed Uduman; Joel N. H. Stern; Kevin C. O'Connor; David A. Hafler; Francois Vigneault; Steven H. Kleinstein (Bioinform., 2014)

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. - Namita T. Gupta; Jason A. Vander Heiden; Mohamed Uduman; Daniel Gadala-Maria; Gur Yaari; Steven H. Kleinstein (Bioinform., 2015)

RAbHIT: R Antibody Haplotype Inference Tool. - Ayelet Peres; Moriah Gidoni; Pazit Polak; Gur Yaari (Bioinform., 2019)

Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE). - Hailong Meng; Gur Yaari; Christopher R. Bolen; Stefan Avey; Steven H. Kleinstein (PLoS Comput. Biol., 2019)

Immunoglobulin Clonotype and Ontogeny Inference. - Pazit Polak; Ramit Mehr; Gur Yaari (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

OGRDB: a reference database of inferred immune receptor genes. - William D. Lees; Christian E. Busse; Martin Corcoran; Mats Ohlin; Cathrine Scheepers; Frederick A. Matsen IV; Gur Yaari; Corey T. Watson; Andrew M. Collins; Adrian J. Shepherd (Nucleic Acids Res., 2020)

VDJbase: an adaptive immune receptor genotype and haplotype database. - Aviv Omer; Or Shemesh; Ayelet Peres; Pazit Polak; Adrian J. Shepherd; Corey T. Watson; Scott D. Boyd; Andrew M. Collins; William D. Lees; Gur Yaari (Nucleic Acids Res., 2020)

Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification. - Netanel Ofer; Orit Shefi; Gur Yaari (Neuroinformatics, 2020)

Gambling Strategies and Prize-Pricing Recommendation in Sports Multi-Bets. - Oz Pirvandy; Moti Fridman; Gur Yaari (Big Data Cogn. Comput., 2021)

The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. - Milena Pavlovic; Lonneke Scheffer; Keshav Motwani; Chakravarthi Kanduri; Radmila Kompova; Nikolay Vazov; Knut Waagan; Fabian L. M. Bernal; Alexandre Almeida Costa; Brian Corrie; Rahmad Akbar; Ghadi S. Al Hajj; et al. (Nat. Mach. Intell., 2021)

Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans. - Miri Gordin; Hagit Philip; Alona Zilberberg; Moriah Gidoni; Raanan Margalit; Christopher Clouser; Kristofor Adams; Francois Vigneault; Irun R. Cohen; Gur Yaari; Sol Efroni (PLoS Comput. Biol., 2021)

An unbiased comparison of immunoglobulin sequence aligners. - Thomas Konstantinovsky; Ayelet Peres; Pazit Polak; Gur Yaari (Briefings Bioinform., 2024)

Guidelines for reproducible analysis of adaptive immune receptor repertoire sequencing data. - Ayelet Peres; Vered Klein; Boaz Frankel; William D. Lees; Pazit Polak; Mark Meehan; Artur Rocha; João Correia Lopes; Gur Yaari (Briefings Bioinform., 2024)

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. - Gisela Gabernet; Susanna Marquez; Robert Bjornson; Alexander Peltzer; Hailong Meng; Edel Aron; Noah Y. Lee; Cole G. Jensen; David Ladd; Mark Polster; Friederike Hanssen; Simon Heumos; et al. (PLoS Comput. Biol., 2024)