Registration and 3D visualization of large microscopy images. - Kishore Mosaliganti; Tony Pan; Richard Sharp; Randall Ridgway; Srivathsan Iyengar; Alexandra Gulacy; Pamela Wenzel; Alain de Bruin; Raghu Machiraju; Kun Huang 001; Gustavo Leone; Joel H. Saltz (Image Processing, 2006)

Multi-Resolution Image Segmentation Using the 2-Point Correlation Functions. - Firdaus Janoos; M. Okan Irfanoglu; Kishore Mosaliganti; Raghu Machiraju; Kun Huang 001; Pamela Wenzel; Alain de Bruin; Gustavo Leone (ISBI, 2007)

Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. - Richard Sharp; Randall Ridgway; Kishore Mosaliganti; Pamela Wenzel; Tony Pan; Alain de Bruin; Raghu Machiraju; Kun Huang 001; Gustavo Leone; Joel H. Saltz (Comput. Sci. Eng., 2007)

Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies. - Kishore Mosaliganti; Firdaus Janoos; Richard Sharp; Randall Ridgway; Raghu Machiraju; Kun Huang 001; Pamela Wenzel; Alain de Bruin; Gustavo Leone; Joel H. Saltz (IEEE Trans. Medical Imaging, 2007)

Geometry-driven Visualization of Microscopic Structures in Biology. - Kishore Mosaliganti; Raghu Machiraju; Kun Huang 001; Gustavo Leone (Comput. Graph. Forum, 2008)

e-Science, caGrid, and Translational Biomedical Research. - Joel H. Saltz; Tahsin M. Kurç; Shannon Hastings; Stephen Langella; Scott Oster; David Ervin; Ashish Sharma 001; Tony Pan; Metin N. Gurcan; Justin Permar; Renato Ferreira 001; Philip R. O. Payne; et al. (Computer, 2008)

An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. - Kishore Mosaliganti; Tony Pan; Randall Ridgway; Richard Sharp; Lee Cooper 001; Alex Gulacy; Ashish Sharma 001; M. Okan Irfanoglu; Raghu Machiraju; Tahsin M. Kurç; Alain de Bruin; Pamela Wenzel; et al. (J. Biomed. Informatics, 2008)

Reconstruction of Cellular Biological Structures from Optical Microscopy Data. - Kishore Mosaliganti; Lee Cooper 001; Richard Sharp; Raghu Machiraju; Gustavo Leone; Kun Huang 001; Joel H. Saltz (IEEE Trans. Vis. Comput. Graph., 2008)

Tensor classification of N-point correlation function features for histology tissue segmentation. - Kishore Mosaliganti; Firdaus Janoos; M. Okan Irfanoglu; Randall Ridgway; Raghu Machiraju; Kun Huang 001; Joel H. Saltz; Gustavo Leone; Michael C. Ostrowski (Medical Image Anal., 2009)

Analysis of spatial variation of nuclear morphology in tissue microenvironments. - Shantanu Singh; Sundaresan Raman; Enrico Caserta; Gustavo Leone; Michael C. Ostrowski; Jens Rittscher; Raghu Machiraju (ISBI, 2010)

Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning. - Shantanu Singh; Firdaus Janoos; Thierry Pécot; Enrico Caserta; Gustavo Leone; Jens Rittscher; Raghu Machiraju (IPMI, 2011)

Non-parametric Population Analysis of Cellular Phenotypes. - Shantanu Singh; Firdaus Janoos; Thierry Pécot; Enrico Caserta; Kun Huang 001; Jens Rittscher; Gustavo Leone; Raghu Machiraju (MICCAI (2), 2011)

Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images. - Thierry Pécot; Shantanu Singh; Enrico Caserta; Kun Huang 001; Raghu Machiraju; Gustavo Leone (ISBI, 2012)

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq. - Xing Tang; Arunima Srivastava; Huayang Liu; Raghu Machiraju; Kun Huang 001; Gustavo Leone (Bioinform., 2017)

Capturing variations in nuclear phenotypes. - Sundaresan Raman; Shantanu Singh; Thierry Pécot; Enrico Caserta; Kun Huang 001; Jens Rittscher; Gustavo Leone; Raghu Machiraju (J. Comput. Sci., 2019)

Deep learning tools and modeling to estimate the temporal expression of cell cycle proteins from 2D still images. - Thierry Pécot; Maria C. Cuitiño; Roger H. Johnson; Cynthia Timmers; Gustavo Leone (PLoS Comput. Biol., 2022)