Lossless filter for multiple repeats with bounded edit distance. - Pierre Peterlongo; Gustavo Akio Tominaga Sacomoto; Alair Pereira do Lago; Nadia Pisanti; Marie-France Sagot (Algorithms Mol. Biol., 2009)

A New Algorithm for Sparse Suffix Trees. - Gustavo Akio Tominaga Sacomoto; Alair Pereira do Lago (BSB, 2011)

Efficient Bubble Enumeration in Directed Graphs. - Etienne Birmelé; Pierluigi Crescenzi; Rui A. Ferreira; Roberto Grossi; Vincent Lacroix; Andrea Marino 001; Nadia Pisanti; Gustavo Akio Tominaga Sacomoto; Marie-France Sagot (SPIRE, 2012)

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data. - Gustavo Akio Tominaga Sacomoto; Janice Kielbassa; Rayan Chikhi; Raluca Uricaru; Pavlos Antoniou; Marie-France Sagot; Pierre Peterlongo; Vincent Lacroix (BMC Bioinform., 2012)

Optimal Listing of Cycles and st-Paths in Undirected Graphs - Etienne Birmelé; Rui A. Ferreira; Roberto Grossi; Andrea Marino 001; Nadia Pisanti; Romeo Rizzi; Gustavo Akio Tominaga Sacomoto; Marie-France Sagot (CoRR, 2012)

Optimal Listing of Cycles and st-Paths in Undirected Graphs. - Etienne Birmelé; Rui A. Ferreira; Roberto Grossi; Andrea Marino 001; Nadia Pisanti; Romeo Rizzi; Gustavo Sacomoto (SODA, 2013)

A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data. - Gustavo Sacomoto; Vincent Lacroix; Marie-France Sagot (WABI, 2013)

Amortized Õ(|V|) -Delay Algorithm for Listing Chordless Cycles in Undirected Graphs. - Rui A. Ferreira; Roberto Grossi; Romeo Rizzi; Gustavo Sacomoto; Marie-France Sagot (ESA, 2014)

Efficiently Listing Bounded Length st-Paths. - Romeo Rizzi; Gustavo Sacomoto; Marie-France Sagot (IWOCA, 2014)

Navigating in a Sea of Repeats in RNA-seq without Drowning. - Gustavo Sacomoto; Blerina Sinaimeri; Camille Marchet; Vincent Miele; Marie-France Sagot; Vincent Lacroix (WABI, 2014)

Using cascading Bloom filters to improve the memory usage for de Brujin graphs. - Kamil Salikhov; Gustavo Sacomoto; Gregory Kucherov (Algorithms Mol. Biol., 2014)

Efficient Algorithms for de novo Assembly of Alternative Splicing Events from RNA-seq Data. - Gustavo Sacomoto (CoRR, 2014)

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs. - Gustavo Sacomoto; Vincent Lacroix; Marie-France Sagot (Algorithms Mol. Biol., 2015)

Computing an Evolutionary Ordering is Hard. - Laurent Bulteau; Gustavo Sacomoto; Blerina Sinaimeri (Electron. Notes Discret. Math., 2015)

Superstring Graph: A New Approach for Genome Assembly. - Bastien Cazaux; Gustavo Sacomoto; Eric Rivals (AAIM, 2016)

Computing and Listing st-Paths in Public Transportation Networks. - Katerina Böhmová; Matús Mihalák; Tobias Pröger; Gustavo Sacomoto; Marie-France Sagot (CSR, 2016)

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. - Leandro Lima; Blerina Sinaimeri; Gustavo Sacomoto; Hélène Lopez-Maestre; Camille Marchet; Vincent Miele; Marie-France Sagot; Vincent Lacroix (Algorithms Mol. Biol., 2017)

Computing and Listing st-Paths in Public Transportation Networks. - Katerina Böhmová; Luca Häfliger; Matús Mihalák; Tobias Pröger; Gustavo Sacomoto; Marie-France Sagot (Theory Comput. Syst., 2018)

On Bubble Generators in Directed Graphs. - Vicente Acuña; Roberto Grossi; Giuseppe Francesco Italiano; Leandro Lima; Romeo Rizzi; Gustavo Sacomoto; Marie-France Sagot; Blerina Sinaimeri (Algorithmica, 2020)