Minimally perturbing a gene regulatory network to avoid a disease phenotype: the glioma network as a test case. - Guy Karlebach; Ron Shamir (BMC Syst. Biol., 2010)

Constructing Logical Models of Gene Regulatory Networks by Integrating Transcription Factor-DNA Interactions with Expression Data: An Entropy-Based Approach. - Guy Karlebach; Ron Shamir (J. Comput. Biol., 2012)

Modeling and analysis of perturbations in gene regulatory networks - Guy Karlebach (2012)

Inferring Boolean network states from partial information. - Guy Karlebach (EURASIP J. Bioinform. Syst. Biol., 2013)

A Novel Algorithm for the Maximal Fit Problem in Boolean Networks. - Guy Karlebach (CoRR, 2015)

An expectation-maximization framework for comprehensive prediction of isoform-specific functions. - Guy Karlebach; Leigh Carmody; Jagadish Chandrabose Sundaramurthi; Elena Casiraghi; Peter Hansen; Justin T. Reese; Christopher J. Mungall; Giorgio Valentini; Peter N. Robinson (Bioinform., 2023)

Computing Minimal Boolean Models of Gene Regulatory Networks. - Guy Karlebach; Peter N. Robinson (J. Comput. Biol., 2024)