PRAP: An Automated de novo Repeat Finder Pipeline Parkoyotic Genomes. - Gwo-Liang Chen (BIOCOMP, 2007)

Prodigal: prokaryotic gene recognition and translation initiation site identification. - Doug Hyatt; Gwo-Liang Chen; Philip F. LoCascio; Miriam L. Land; Frank W. Larimer; Loren J. Hauser (BMC Bioinform., 2010)

PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes. - Gwo-Liang Chen; Yun-Juan Chang; Chun-Hway Hsueh (Bioinform., 2013)