ArrayD: A general purpose software for Microarray design. - Anu Sharma; Gyan Prakash Srivastava; Vineet K. Sharma; Srinivasan Ramachandran (BMC Bioinform., 2004)

Functional Annotation from Meta-analysis of Microarray Datasets. - Gyan Prakash Srivastava; Jing Qiu; Dong Xu (BIBM, 2008)

PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands. - Gyan Prakash Srivastava; Juyuan Guo; Huidong Shi; Dong Xu (Bioinform., 2008)

Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana. - Gyan Prakash Srivastava; Ping Li; Jingdong Liu; Dong Xu 002 (BMC Syst. Biol., 2010)

Genome-wide functional annotation by integrating multiple microarray datasets using meta-analysis. - Gyan Prakash Srivastava; Jing Qiu; Dong Xu 002 (Int. J. Data Min. Bioinform., 2010)

PRIMEGENSw3: A Web-Based Tool for High-Throughput Primer and Probe Design. - Garima Kushwaha; Gyan Prakash Srivastava; Dong Xu (BIBM, 2011)