Virus genomes reveal factors that spread and sustained the Ebola epidemic. - Gytis Dudas; Luiz Max Carvalho; Trevor Bedford; Andrew J. Tatem; Guy Baele; Nuno R. Faria; Daniel J. Park; Jason T. Ladner; Armando Arias; Danny Asogun; Filip Bielejec; Sarah L. Caddy; et al. (Nat., 2017)

Estimating effective population size changes from preferentially sampled genetic sequences. - Michael D. Karcher; Luiz Max Carvalho; Marc A. Suchard; Gytis Dudas; Vladimir N. Minin (PLoS Comput. Biol., 2020)

PoMeLo: a systematic computational approach to predicting metabolic loss in pathogen genomes. - Abigail Glascock; Eric Waltari; Gytis Dudas; Joan Wong; Vida Ahyong (BMC Bioinform., 2024)