Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager. - Anuj R. Shah; Mudita Singhal; Kyle R. Klicker; Eric G. Stephan; H. Steven Wiley; Katrina M. Waters (Bioinform., 2007)

Receptor downregulation and desensitization enhance the information processing ability of signalling receptors. - Harish Shankaran; H. Steven Wiley; Haluk Resat (BMC Syst. Biol., 2007)

Cell Surface Receptors for Signal Transduction and Ligand Transport: A Design Principles Study. - Harish Shankaran; Haluk Resat; H. Steven Wiley (PLoS Comput. Biol., 2007)

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. - Simon Rogers; Mark A. Girolami; Walter Kolch; Katrina M. Waters; Tao Liu 003; Brian Thrall; H. Steven Wiley (Bioinform., 2008)

An analysis pipeline for the inference of protein-protein interaction networks. - Ronald C. Taylor; Mudita Singhal; Don Simone Daly; Jason M. Gilmore; William R. Cannon; Kelly Domico; Amanda M. White; Deanna L. Auberry; Kenneth J. Auberry; Brian Hooker; Gregory B. Hurst; Jason E. McDermott; et al. (Int. J. Data Min. Bioinform., 2009)

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling. - Pawel P. Labaj; Germán G. Leparc; Bryan E. Linggi; Lye Meng Markillie; H. Steven Wiley; David P. Kreil (Bioinform., 2011)

Management, analysis, and visualization of experimental and observational data - The convergence of data and computing. - E. Wes Bethel; Martin Greenwald; Kerstin Kleese van Dam; Manish Parashar; Stefan M. Wild; H. Steven Wiley (eScience, 2016)

Blazing Signature Filter: a library for fast pairwise similarity comparisons. - Joon-Yong Lee; Grant M. Fujimoto; Ryan Wilson; H. Steven Wiley; Samuel H. Payne (BMC Bioinform., 2018)

SBbadger: biochemical reaction networks with definable degree distributions. - Michael A Kochen; H. Steven Wiley; Song Feng; Herbert M. Sauro (Bioinform., 2022)