Neurocontrol of Nonlinear Dynamic Systems Subject to Unmeasured Disturbance Inputs. - Habtom W. Ressom; Lothar Litz (ICANN, 1997)

Modeling a Refrigeration System Using Recurrent Neural Networks. - Habtom W. Ressom (Fuzzy Days, 1999)

Modeling a compression plant using recurrent neural networks. - Habtom W. Ressom (IJCNN, 1999)

Dynamic system and virtual sensor modeling using neural networks = Modellierung dynamischer Systeme und virtueller Sensoren mit neuronalen Netzen. - Habtom W. Ressom (VDI-Verlag, 1999)

On-line estimation of key quality parameters in nonwoven production. - Habtom W. Ressom; Holger Voos; Lothar Litz; Peter Schmitt (SMC, 2000)

Biodiversity and Ecosystems Informatics Workshop for the Indian River Lagoon. - Mohamad T. Musavi; Habtom W. Ressom; Ross Hinkle; Richard L. Miller (DG.O, 2002)

Improving robustness of fuzzy gene modeling. - Robert Reynolds 002; Habtom W. Ressom; Mohamad T. Musavi; Christian Domnisoru (ESANN, 2002)

Double self-organizing maps to cluster gene expression data. - Dali Wang; Habtom W. Ressom; Mohamad T. Musavi; Christian Domnisoru (ESANN, 2002)

Learning Premises of Fuzzy Rules for Knowledge Acquisition in Classification Problems. - Ning Xiong 001; Lothar Litz; Habtom W. Ressom (Knowl. Inf. Syst., 2002)

Fuzzy logic-based gene regulatory network. - Habtom W. Ressom; Dali Wang; Rency S. Varghese; Robert Reynolds 002 (FUZZ-IEEE, 2003)

Monitoring seagrass health using neural networks. - Habtom W. Ressom; S. K. Fyfe; Padma Natarajan; S. Srirangam (IJCNN, 2003)

Adaptive double self-organizing map and its application in gene expression data. - Habtom W. Ressom; Dali Wang; Padma Natarajan (IJCNN, 2003)

Ensemble neural network methods for satellite-derived estimation of chlorophyll α. - Wayne H. Slade Jr.; Richard L. Miller; Habtom W. Ressom; Padma Natarajan (IJCNN, 2003)

Neural network-based estimation of light attenuation coefficient. - S. Srirangam; Habtom W. Ressom; Padma Natarajan; Mohamad T. Musavi; R. W. Virnstein; L. J. Morris; W. Tweedale (IJCNN, 2003)

Computational Methods for Identifying Number of Clusters in Gene Expression Data. - Habtom W. Ressom; Dali Wang; Padma Natarajan (Neural Networks and Computational Intelligence, 2003)

Adaptive double self-organizing maps for clustering gene expression profiles. - Habtom W. Ressom; Dali Wang; Padma Natarajan (Neural Networks, 2003)

Ocean color inversion by particle swarm optimization. - Wayne H. Slade Jr.; Habtom W. Ressom; Mohamad T. Musavi; Richard L. Miller (IEEE Congress on Evolutionary Computation, 2004)

A fuzzy confidence value for DNA bases. - Rency Susan Varghese; Mohamad T. Musavi; Habtom W. Ressom (FUZZ-IEEE, 2004)

Neural network based light attenuation model for monitoring health. - Habtom W. Ressom; Padma Natarajan; Siva Srirangam; Mohamad T. Musavi; Robert W. Virnstein; Lori J. Morris; Wendy Tweedale (IJCNN, 2004)

Estimation of photosynthetic efficiency for monitoring seagrass health using neural networks. - Habtom W. Ressom; S. K. Fyfe; Siva Srirangam; Mohamad T. Musavi; Padma Natarajan (Neural Networks and Computational Intelligence, 2004)

Neural network-based retrieval of phytoplankton abundance from remotely-sensed ocean radiance. - Wayne H. Slade Jr.; Richard L. Miller; Habtom W. Ressom; Padma Natarajan (Neural Networks and Computational Intelligence, 2004)

Inversion of ocean color observations using particle swarm optimization. - Wayne H. Slade Jr.; Habtom W. Ressom; Mohamad T. Musavi; Richard L. Miller (IEEE Trans. Geosci. Remote. Sens., 2004)

Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification. - Habtom W. Ressom; Rency S. Varghese; Eduard Orvisky; Steven K. Drake; Glen L. Hortin; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (CIBCB, 2005)

Particle swarm optimization for analysis of mass spectral serum profiles. - Habtom W. Ressom; Rency S. Varghese; Daniel Saha; Eduard Orvisky; Lenka Goldman; Emanuel F. Petricoin; Thomas P. Conrads; Timothy D. Veenstra; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (GECCO, 2005)

Analysis of mass spectral serum profiles for biomarker selection. - Habtom W. Ressom; Rency S. Varghese; Mohamed Abdel-Hamid; Sohair Abdel-Latif Eissa; Daniel Saha; Lenka Goldman; Emanuel F. Petricoin; Thomas P. Conrads; Timothy D. Veenstra; Christopher A. Loffredo; Radoslav Goldman (Bioinform., 2005)

Applications of fuzzy logic in genomics. - Habtom W. Ressom; Padma Natarajan; Rency S. Varghese; Mohamad T. Musavi (Fuzzy Sets Syst., 2005)

Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles. - Habtom W. Ressom; Rency S. Varghese; Eduard Orvisky; Steven K. Drake; Glen L. Hortin; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (CIBCB, 2006)

Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence. - Habtom W. Ressom; Yuji Zhang 001; Jianhua Xuan; Yue Joseph Wang; Robert Clarke (CIBCB, 2006)

Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra. - Habtom W. Ressom; Rency S. Varghese; Eduard Orvisky; Steven K. Drake; Glen L. Hortin; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (EMBC, 2006)

Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence. - Habtom W. Ressom; Yuji Zhang 001; Jianhua Xuan; Yue Wang 021; Robert Clarke (EMBC, 2006)

Estimation of Ocean Water Chlorophyll-a Concentration Using Fuzzy C-means Clustering and Artificial Neural Networks. - Habtom W. Ressom; Kevin Turner; Mohamad T. Musavi (IJCNN, 2006)

Peak selection from MALDI-TOF mass spectra using ant colony optimization. - Habtom W. Ressom; Rency S. Varghese; Steven K. Drake; Glen L. Hortin; Mohamed Abdel-Hamid; Christopher A. Loffredo; Radoslav Goldman (Bioinform., 2007)

Neural network-based light attenuation model for monitoring seagrass population in the Indian river lagoon. - Mohamad T. Musavi; Habtom W. Ressom; Siva Srirangam; Padma Natarajan; Robert W. Virnstein; Lori J. Morris; Wendy Tweedale (J. Intell. Inf. Syst., 2007)

Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS Data. - Getachew K. Befekadu; Mahlet G. Tadesse; Habtom W. Ressom (BIOCOMP, 2008)

Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling. - Yuji Zhang 001; Jianhua Xuan; Benildo de los Reyes; Robert Clarke; Habtom W. Ressom (BIOCOMP, 2008)

Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers. - Habtom W. Ressom; Rency S. Varghese; Lenka Goldman; Christopher A. Loffredo; Mohamed Abdel-Hamid; Zuzana Kyselova; Yehia Mechref; Milos V. Novotny; Radoslav Goldman (Pacific Symposium on Biocomputing, 2008)

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. - Yuji Zhang 001; Jianhua Xuan; Benildo de los Reyes; Robert Clarke; Habtom W. Ressom (BMC Bioinform., 2008)

Session Introduction. - Michael F. Ochs; John Quackenbush; Ramana Davuluri; Habtom W. Ressom (Pacific Symposium on Biocomputing, 2009)

Analysis of LC-MS Data Using probabilitic-based mixture regression models (Analyse von LC-MS-Daten mit wahrscheinlichkeitsbasierter Mischung von Regressionsmodellen). - Habtom W. Ressom; Getachew K. Befekadu; Mahlet G. Tadesse (Autom., 2009)

Metabolomic profiling for biomarker discovery in pancreatic cancer. - Prabhjit Kaur; Kathryn Sheikh; Alexander Kirilyuk; Ksenia Kirilyuk; Habtom W. Ressom; Amrita K. Cheema; Bhaskar Kallakury (BIBM, 2010)

A new method for alignment of LC-MALDI-TOF data. - Zhiqun Tang; Lihua Zhang; Amrita K. Cheema; Habtom W. Ressom (BIBM, 2010)

Using a spike-in experiment to evaluate analysis of LC-MS data. - Leepika Tuli; Tsung-Heng Tsai; Rency S. Varghese; Amrita K. Cheema; Habtom W. Ressom (BIBM Workshops, 2010)

Module-based biomarker discovery in breast cancer. - Yuji Zhang 001; Jianhua Jason Xuan; Robert Clarke; Habtom W. Ressom (BIBM, 2010)

Quality assessment of LC-MS metabolomic data. - Mohammad R. Nezami Ranjbar; Yue Joseph Wang; Habtom W. Ressom (BIBM Workshops, 2011)

Bayesian Alignment Model for LC-MS Data. - Tsung-Heng Tsai; Mahlet G. Tadesse; Yue Joseph Wang; Habtom W. Ressom (BIBM, 2011)

Meta-analysis of LC-MS based metabolomic experiments. - Rency S. Varghese; Bin Zhou; Habtom W. Ressom (BIBM Workshops, 2011)

Analysis of aberrant pathways using HCC candidate biomarkers identified from high-throuput omics studies. - Jinlian Wang; Habtom W. Ressom (BIBM Workshops, 2011)

A Computational Pipeline for LC-MS/MS Based Metabolite Identification. - Bin Zhou; Jun Feng Xiao; Habtom W. Ressom (BIBM, 2011)

Workshop Introduction. - Michael F. Ochs; Rachel Karchin; Habtom W. Ressom; Robert Gentleman (Pacific Symposium on Biocomputing, 2011)

Probabilistic Mixture Regression Models for Alignment of LC-MS Data. - Getachew K. Befekadu; Mahlet G. Tadesse; Tsung-Heng Tsai; Habtom W. Ressom (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Evaluation of normalization methods for analysis of LC-MS data. - Mohammad R. Nezami Ranjbar; Yi Zhao; Mahlet G. Tadesse; Yue Joseph Wang; Habtom W. Ressom (BIBM Workshops, 2012)

Normalization of LC-MS data using Gaussian process. - Mohammad R. Nezami Ranjbar; Mahlet G. Tadesse; Yue Joseph Wang; Habtom W. Ressom (GENSiPS, 2012)

Integration of multiple data sources for identifying functional modules using Bayesian network. - Jinlian Wang; Hongyan Yuan; Mahlet G. Tadesse; Habtom W. Ressom (GENSiPS, 2012)

Variability assessment of LC-MS experiments and its application to experimental design and difference detection. - Yi Zhao; Tsung-Heng Tsai; Cristina Di Poto; Lewis K. Pannell; Mahlet G. Tadesse; Habtom W. Ressom (GENSiPS, 2012)

Identification of aberrant pathways and network activities from high-throughput data. - Jinlian Wang; Yuji Zhang 001; Catalin Marian; Habtom W. Ressom (Briefings Bioinform., 2012)

GPA: An algorithm for LC/MS based glycan profile annotation. - Minkun Wang; Guoqiang Yu; Yehia Mechref; Habtom W. Ressom (BIBM, 2013)

Reconstructing biological networks using low order partial correlation. - Yiming Zuo 002; Guoqiang Yu; Mahlet G. Tadesse; Habtom W. Ressom (BIBM, 2013)

Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards. - Tsung-Heng Tsai; Mahlet G. Tadesse; Cristina Di Poto; Lewis K. Pannell; Yehia Mechref; Yue Joseph Wang; Habtom W. Ressom (Bioinform., 2013)

Module-based breast cancer classification. - Yuji Zhang 001; Jianhua Xuan; Robert Clarke; Habtom W. Ressom (Int. J. Data Min. Bioinform., 2013)

Profile-Based LC-MS Data Alignment-A Bayesian Approach. - Tsung-Heng Tsai; Mahlet G. Tadesse; Yue Joseph Wang; Habtom W. Ressom (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

A new approach for multi-omic data integration. - Yiming Zuo 002; Guoqiang Yu; Chi Zhang; Habtom W. Ressom (BIBM, 2014)

Purification of LC/GC-MS based biomolecular expression profiles using a topic model. - Minkun Wang; Tsung-Heng Tsai; Guoqiang Yu; Habtom W. Ressom (BIBM, 2015)

Integrating prior biological knowledge and graphical LASSO for network inference. - Yiming Zuo 002; Guoqiang Yu; Habtom W. Ressom (BIBM, 2015)

Integrative analysis of LC-MS based glycomic and proteomic data. - Minkun Wang; Guoqiang Yu; Habtom W. Ressom (EMBC, 2015)

SIMAT: GC-SIM-MS data analysis tool. - Mohammad R. Nezami Ranjbar; Cristina Di Poto; Yue Joseph Wang; Habtom W. Ressom (BMC Bioinform., 2015)

Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS. - Mohammad R. Nezami Ranjbar; Mahlet G. Tadesse; Yue Joseph Wang; Habtom W. Ressom (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Network-based analysis of reverse phase protein array data. - Rency S. Varghese; Yiming Zuo 002; Yi Zhao; Yong-Wei Zhang; Sandra A. Jablonski; Mariaelena Pierobon; Emanuel F. Petricoin; Habtom W. Ressom; Louis M. Weiner (BIBM, 2016)

Metabolomic data deconvolution using probabilistic purification models. - Minkun Wang; Cristina Di Poto; Alessia Ferrarini; Guoqiang Yu; Habtom W. Ressom (BIBM, 2016)

Multi-omic approaches for characterization of hepatocellular carcinoma. - Habtom W. Ressom; Cristina Di Poto; Alessia Ferrarini; Yunli Hu; Mohammad R. Nezami Ranjbar; Ehwang Song; Rency S. Varghese; Minkun Wang; Shiyue Zhou; Rui Zhu; Yiming Zuo 002; Mahlet G. Tadesse; et al. (EMBC, 2016)

Integrative Analysis of Proteomic, Glycomic, and Metabolomic Data for Biomarker Discovery. - Minkun Wang; Guoqiang Yu; Habtom W. Ressom (IEEE J. Biomed. Health Informatics, 2016)

Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO. - Yiming Zuo 002; Yi Cui; Guoqiang Yu; Ruijiang Li; Habtom W. Ressom (BMC Bioinform., 2017)

INDEED: R package for network based differential expression analysis. - Zhenzhi Li; Yiming Zuo 002; Chaohui Xu; Rency S. Varghese; Habtom W. Ressom (BIBM, 2018)

Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients. - Megan E. Barefoot; Yifan Chen; Rency S. Varghese; Yuan Zhou; Habtom W. Ressom (BIBM, 2019)

Metabolite Identification Using Artificial Neural Network. - Ziling Fan; Kian Ghaffari; Amber Alley; Habtom W. Ressom (BIBM, 2019)

Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma. - Megan E. Barefoot; Rency S. Varghese; Yuan Zhou; Cristina Di Poto; Alessia Ferrarini; Habtom W. Ressom (EMBC, 2019)

MOTA: Multi-omic integrative analysis for biomarker discovery. - Ziling Fan; Yuan Zhou; Habtom W. Ressom (EMBC, 2019)

Integrative Analysis to Identify Race-Associated Metabolite Biomarkers for Hepatocellular Carcinoma. - Yifan Chen; Megan E. Barefoot; Rency S. Varghese; Kuijun Wang; Cristina Di Poto; Habtom W. Ressom (EMBC, 2020)

Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma. - Rency S. Varghese; Yuan Zhou; Yifan Chen; Megan E. Barefoot; Mahlet G. Tadesse; Habtom W. Ressom (EMBC, 2020)

Cell-type Deconvolution and Age Estimation Using DNA Methylation Reveals NK Cell Deficiency in the Hepatocellular Carcinoma Microenvironment. - Sidharth S. Jain; Megan E. Barefoot; Rency S. Varghese; Habtom W. Ressom (BIBM, 2022)

A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma. - Marie Denis; Rency S. Varghese; Megan E. Barefoot; Mahlet G. Tadesse; Habtom W. Ressom (EMBC, 2022)

Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma. - Yichen Guo; Marie Denis; Rency S. Varghese; Sidharth S. Jain; Mahlet G. Tadesse; Habtom W. Ressom (BIBM, 2023)

Deep Learning Based Metabolite Annotation. - Hoi Yan Katharine Chau; Hongyu Ao; Xinran Zhang; Shijinqiu Gao; Rency S. Varghese; Habtom W. Ressom (EMBC, 2023)