Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion. - Hadas Birin; Zohar Gal-Or; Isaac Elias; Tamir Tuller (WABI, 2007)

Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion. - Hadas Birin; Zohar Gal-Or; Isaac Elias; Tamir Tuller (Bioinform., 2008)

Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples. - Tamir Tuller; Hadas Birin; Martin Kupiec; Eytan Ruppin (RECOMB-CG, 2009)

Reconstructing Ancestral Genomic Sequences by Co-Evolution: Formal Definitions, Computational Issues, and Biological Examples. - Tamir Tuller; Hadas Birin; Martin Kupiec; Eytan Ruppin (J. Comput. Biol., 2010)

Efficient algorithms for reconstructing gene content by co-evolution. - Hadas Birin; Tamir Tuller (BMC Bioinform., 2011)