The FALC-Loop web server for protein loop modeling. - Junsu Ko; Dongseon Lee; Hahnbeom Park; Evangelos A. Coutsias; Julian Lee; Chaok Seok (Nucleic Acids Res., 2011)

GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions. - Junsu Ko; Hahnbeom Park; Chaok Seok (BMC Bioinform., 2012)

GalaxyWEB server for protein structure prediction and refinement. - Junsu Ko; Hahnbeom Park; Lim Heo; Chaok Seok (Nucleic Acids Res., 2012)

GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity. - Hasup Lee 002; Hahnbeom Park; Junsu Ko; Chaok Seok (Bioinform., 2013)

GalaxyRefine: protein structure refinement driven by side-chain repacking. - Lim Heo; Hahnbeom Park; Chaok Seok (Nucleic Acids Res., 2013)

GalaxyGPCRloop: Template-Based and Ab Initio Structure Sampling of the Extracellular Loops of G-Protein-Coupled Receptors. - Jonghun Won; Gyu Rie Lee; Hahnbeom Park; Chaok Seok (J. Chem. Inf. Model., 2018)

De novo design of a fluorescence-activating β-barrel. - Jiayi Dou; Anastassia A. Vorobieva; William Sheffler; Lindsey Doyle; Hahnbeom Park; Matthew J. Bick; Binchen Mao; Glenna W. Foight; Min-Yen Lee; Lauren A. Gagnon; Lauren P. Carter; Banumathi Sankaran; et al. (Nat., 2018)

Conditioning by adaptive sampling for robust design. - David H. Brookes; Hahnbeom Park; Jennifer Listgarten (ICML, 2019)

Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination. - Ryan E. Pavlovicz; Hahnbeom Park; Frank DiMaio (PLoS Comput. Biol., 2020)

Benchmarking applicability of medium-resolution cryo-EM protein structures for structure-based drug design. - Seho Lee; Chaok Seok; Hahnbeom Park (J. Comput. Chem., 2023)

Recent advances in interpretable machine learning using structure-based protein representations. - Luiz Felipe Vecchietti; Minji Lee; Begench Hangeldiyev; Hyunkyu Jung; Hahnbeom Park; Tae-Kyun Kim 001; Meeyoung Cha; Ho Min Kim (CoRR, 2024)

Deep learning molecular interaction motifs from receptor structures alone. - Seeun Kim; Simaek Oh; Hyeonuk Woo; Jiho Sim; Chaok Seok; Hahnbeom Park (J. Cheminformatics, 2025)