XPFS: A new parallel PROSITE profile search algorithm on Xeon Phi. - Quangang Zheng; Haidong Lan; Weiguo Liu (BIBM, 2014)

XSW: Accelerating Biological Database Search on Xeon Phi. - Lipeng Wang; Yuandong Chan; Xiaohui Duan; Haidong Lan; Xiangxu Meng; Weiguo Liu (IPDPS Workshops, 2014)

Accelerating large-scale biological database search on Xeon Phi-based neo-heterogeneous architectures. - Haidong Lan; Weiguo Liu; Bertil Schmidt; Bingqiang Wang (BIBM, 2015)

Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters. - Haidong Lan; Yuandong Chan; Kai Xu; Bertil Schmidt; Shaoliang Peng; Weiguo Liu (BMC Bioinform., 2016)

PUNAS: A Parallel Ungapped-Alignment-Featured Seed Verification Algorithm for Next-Generation Sequencing Read Alignment. - Yuandong Chan; Kai Xu; Haidong Lan; Weiguo Liu; Yongchao Liu; Bertil Schmidt (IPDPS, 2017)

SWhybrid: A Hybrid-Parallel Framework for Large-Scale Protein Sequence Database Search. - Haidong Lan; Weiguo Liu; Yongchao Liu; Bertil Schmidt (IPDPS, 2017)

End-to-end I/O Monitoring on a Leading Supercomputer. - Bin Yang 043; Xu Ji; Xiaosong Ma; Xiyang Wang 003; Tianyu Zhang; Xiupeng Zhu; Nosayba El-Sayed; Haidong Lan; Yibo Yang; Jidong Zhai; Weiguo Liu; Wei Xue 003 (NSDI, 2019)

BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures. - Jikai Zhang; Haidong Lan; Yuandong Chan; Yuan Shang; Bertil Schmidt; Weiguo Liu (Bioinform., 2019)

FeatherCNN: Fast Inference Computation with TensorGEMM on ARM Architectures. - Haidong Lan; Jintao Meng 001; Christian Hundt 002; Bertil Schmidt; Minwen Deng; Xiaoning Wang; Weiguo Liu; Yu Qiao 001; Shengzhong Feng (IEEE Trans. Parallel Distributed Syst., 2020)

RabbitQC: high-speed scalable quality control for sequencing data. - Zekun Yin; Hao Zhang 142; Meiyang Liu; Wen Zhang; Honglei Song; Haidong Lan; Yanjie Wei; Beifang Niu; Bertil Schmidt; Weiguo Liu (Bioinform., 2021)

tFold-TR: Combining Deep Learning Enhanced Hybrid Potential Energy for Template-Based Modelling Structure Refinement. - Liangzhen Zheng; Haidong Lan; Tao Shen; Jiaxiang Wu 001; Sheng Wang 001; Wei Liu 005; Junzhou Huang (CoRR, 2021)

EBM-Fold: Fully-Differentiable Protein Folding Powered by Energy-based Models. - Jiaxiang Wu 001; Shitong Luo; Tao Shen; Haidong Lan; Sheng Wang 001; Junzhou Huang (CoRR, 2021)

Efficient Phase-Functioned Real-time Character Control in Mobile Games: A TVM Enabled Approach. - Haidong Lan; Wenxi Zhu; Du Wu; Qian Qiu; Honglin Zhu; Jingjing Zhao; Xinghui Fu; Liu Wei; Jintao Meng 001; Minwen Deng (ICPP, 2022)

Improving protein-ligand docking and screening accuracies by incorporating a scoring function correction term. - Liangzhen Zheng; Jintao Meng 001; Kai Jiang; Haidong Lan; Zechen Wang; Mingzhi Lin; Weifeng Li; Hongwei Guo; Yanjie Wei; Yuguang Mu (Briefings Bioinform., 2022)

Automatic Generation of High-Performance Convolution Kernels on ARM CPUs for Deep Learning. - Jintao Meng 001; Chen Zhuang; Peng Chen 035; Mohamed Wahib; Bertil Schmidt; Xiao Wang 004; Haidong Lan; Dou Wu; Minwen Deng; Yanjie Wei; Shengzhong Feng (IEEE Trans. Parallel Distributed Syst., 2022)

Vortex: Efficient Sample-Free Dynamic Tensor Program Optimization via Hardware-aware Strategy Space Hierarchization. - Yangjie Zhou 001; Honglin Zhu; Qian Qiu; Weihao Cui; Zihan Liu 002; Cong Guo 003; Siyuan Feng; Jintao Meng 001; Haidong Lan; Jingwen Leng; Wenxi Zhu; Minwen Deng (CoRR, 2024)