OHMI: the ontology of host-microbiome interactions. - Yongqun He; Haihe Wang; Jie Zheng 001; Daniel P. Beiting; Anna Maria Masci; Hong Yu 014; Kaiyong Liu; Jianmin Wu; Jeffrey L. Curtis; Barry Smith 001; Alexander V. Alekseyenko; Jihad S. Obeid (J. Biomed. Semant., 2019)

Vaxign-ML: supervised machine learning reverse vaccinology model for improved prediction of bacterial protective antigens. - Edison Ong; Haihe Wang; Mei U. Wong; Meenakshi Seetharaman; Ninotchka Valdez; Yongqun He (Bioinform., 2020)

Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning. - Edison Ong; Michael F. Cooke; Anthony Huffman; Zuoshuang Xiang; Mei U. Wong; Haihe Wang; Meenakshi Seetharaman; Ninotchka Valdez; Yongqun He (Nucleic Acids Res., 2021)