Probabilistic Paths for Protein Complex Inference. - Hailiang Huang 005; Lan V. Zhang; Frederick P. Roth; Joel S. Bader (Systems Biology and Computational Proteomics, 2006)

Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps. - Hailiang Huang 005; Bruno Jedynak; Joel S. Bader (PLoS Comput. Biol., 2007)

Precision and recall estimates for two-hybrid screens. - Hailiang Huang 005; Joel S. Bader (Bioinform., 2009)

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters. - Hailiang Huang 005; Sandeep Tata; Robert J. Prill (Bioinform., 2013)