BLISS: biding site level identification of shared signal-modules in DNA regulatory sequences. - Hailong Meng; Arunava Banerjee; Lei Zhou (BMC Bioinform., 2006)

BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences. - Hailong Meng; Arunava Banerjee; Lei Zhou (Bioinform., 2007)

Identification of a small optimal subset of CpG sites as bio-markers from high-throughput DNA methylation profiles. - Hailong Meng; Edward Lenn Murrelle; Guoya Li (BMC Bioinform., 2008)

A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling. - Hailong Meng; Andrew R. Joyce; Daniel E. Adkins; Priyadarshi Basu; Yankai Jia; Guoya Li; Tapas K. Sengupta; Barbara K. Zedler; Edward Lenn Murrelle; Edwin J. C. G. van den Oord (BMC Bioinform., 2010)

A Sequential Partial Optimization Algorithm for Minimax Design of Separable-Denominator 2-D IIR Filters. - Xiaoping Lai; Hailong Meng; Jiuwen Cao; Zhiping Lin 001 (IEEE Trans. Signal Process., 2017)

A Sequential Partial Optimization Algorithm with Guaranteed Convergence for Minimax Design of IIR Digital Filters. - Hailong Meng; Xiaoping Lai; Jiuwen Cao; Zhiping Lin 001 (Circuits Syst. Signal Process., 2018)

A Modified Annulus Sector Constraint for Constrained FIR Filter Designs. - Huoping Yi; Xiaoping Lai; Hailong Meng (Circuits Syst. Signal Process., 2019)

Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE). - Hailong Meng; Gur Yaari; Christopher R. Bolen; Stefan Avey; Steven H. Kleinstein (PLoS Comput. Biol., 2019)

A Fast Vehicle Counting and Traffic Volume Estimation Method Based on Convolutional Neural Network. - Henglong Yang; Youmei Zhang; Yu Zhang; Hailong Meng; Shuang Li 016; Xianglin Dai (IEEE Access, 2021)

Second-Order EKF White Noise Estimator Design for Hybrid Systems. - Yuxiang Liang; Huihong Zhao; Yunlong Shang; Hailong Meng (Symmetry, 2021)

nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. - Gisela Gabernet; Susanna Marquez; Robert Bjornson; Alexander Peltzer; Hailong Meng; Edel Aron; Noah Y. Lee; Cole G. Jensen; David Ladd; Mark Polster; Friederike Hanssen; Simon Heumos; et al. (PLoS Comput. Biol., 2024)

A lightweight security defense algorithm for multimodal attack blocking in industrial control networks based on momentum enhanced feature graphs. - Zhenyong Yang; Changzhong Gao; Yong Wang; Hailong Meng; Shicong Han (Secur. Priv., 2024)

Putting computational models of immunity to the test - An invited challenge to predict B.pertussis vaccination responses. - Pramod Shinde; Lisa Willemsen; Michael Anderson; Minori Aoki; Saonli Basu; Julie G. Burel; Peng Cheng; Souradipto Ghosh Dastidar; Aidan Dunleavy; Tal Einav; Jamie Forschmiedt; Slim Fourati; et al. (PLoS Comput. Biol., 2025)